OutCyte 2.0

OutCyte 2.0 is a tool for predicting various cellular location attributes which is forked from OutCyte.

OutCyte 2.0 can be loaded with the following command:
module load oc2
Or, if you would like to use it with Python 3.8, you can use:
module load oc2-py3.8

Using OutCyte 2.0

In the OutCyte 2.0 instructions, the software is ran by using Python to run the execute.py script. However, on Monsoon, you can use the oc2 command instead:
module load oc2
oc2 --help
Additionally, the retrain.py script can be accessed with the oc2-retrain command:
module load oc2
oc2-retrain --help