PMI Publications

2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007 2006 2005 2004 2003 2002 2001 2000 1999 1998 1997 1996 1995 1994 1993 1992 1991 1990 1989 1988 1987 1985 1984 1981 1980

2019

Birdsell DN, Yaglom H, Rodriguez E, Engelthaler DM, Maurer M, Gaither M, Vinocur J, Weiss J, Terriquez J, Komatsu K, Ormsby ME. 2019. Phylogenetic Analysis of Francisella tularensis Group A. II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015–2017. Emerging infectious diseases, 25(5), 944.

de Macedo PM, de Melo Teixeira M, Barker BM, Zancopé-Oliveira RM, Almeida-Paes R, do Valle ACF. 2019. Clinical features and genetic background of the sympatric species Paracoccidioides brasiliensis and Paracoccidioides americana. PLoS neglected tropical diseases, 13(4), e0007309.

Kang DW, Adams JB, Coleman DM, Pollard EL, Maldonado J, McDonough-Means S, Caporaso JG, Krajmalnik-Brown R. 2019. Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota. Scientific reports, 9(1), 5821.

Vizentin-Bugoni J, Tarwater CE, Foster JT, Drake DR, Gleditsch JM, Hruska AM, Kelley JP, Sperry JH. 2019. Structure, spatial dynamics, and stability of novel seed dispersal mutualistic networks in Hawaiʻi. Science, 364(6435), 78-82.

Stone NE, Nunnally AE, Jimenez Jr V, Cope EK, Sahl JW, Sheridan K, Hornstra HM, Vinocur J, Settles EW, Headley KC, Williamson CH. 2019. Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins. Anaerobe.

Barker BM, Rajan S, Teixeira MDM, Sewnarine M, Roe C, Engelthaler DM, Galgiani JN. 2019. Coccidioidal Meningitis in New York traced to Texas by Fungal Genomic Analysis. Clinical Infectious Diseases.

Pearson T, Sahl J, Hepp CM, Handady K, Hornstra H, Vazquez AJ, Settles E, Mayo M, Kaestli M, Williamson CH, Price EP. 2019. Pathogen to commensal: longitudinal within-host population dynamics, evolution, and adaptation during a chronic> 16-year Burkholderia pseudomallei infection. bioRxiv, 552109.

Kaehler BD, Bokulich N, McDonald D, Knight R, Caporaso JG, Huttley GA. 2019. Species abundance information improves sequence taxonomy classification accuracy. bioRxiv, 406611.

Bassiouni A, Paramasivan S, Shiffer A, Dillon MR, Cope E, Cooksley C, Ali MJ, Bleier B, Callejas C, Cornet ME, Douglas RG. 2019. Microbiotyping the sinonasal microbiome. bioRxiv, 549311.

Paramasivan S, Bassiouni A, Shiffer A, Dillon MR, Cope E, Cooksley C, Ali MJ, Bleier B, Callejas C, Cornet ME, Douglas RG. 2019. The international sinonasal microbiome study (ISMS): a multi centre, international characterization of sinonasal bacterial ecology. bioRxiv, 548743.

Dwibedi CK, Myrtennäs K, Thelaus J, Öhrman C, Lärkeryd A, Birdsell D, Keim P, Bäckman S, Noppa L, Näslund J, Lundmark E. 2019. Tularemia outbreaks are caused by infective pathogen seedbanks. Umeå University.

Williamson CHD, Stone N, Nunnally AE, Hornstra H, Wagner DM, Roe CC, Vazquez AJ, Nandurkar N, Vinocur J, Terriquez J, Gillece J. 2019. A global to local genomics analysis of Clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network. bioRxiv, 544890.

Foster J, Linden D, Blomberg E, Fisher-Phelps M, Ineson K. 2019. Use of Forested Habitat Adjacent to Highways by Northern Long-Eared Bats (and other Bats). No. NETC 15-1.

Roe CC, Vazquez A, Esposito EP, Zarrilli R, Sahl JW. 2019. Diversity, virulence, and antimicrobial resistance in isolates from the newly emerging Klebsiella pneumoniae ST101 lineage. Frontiers in Microbiology, 10, 542.

Rapisuwon S, Izar B, Batenchuk C, Avila A, Mei S, Sorger P, Parks JM, Cooper SJ, Wagner D, Zeck JC, Charabaty AJ. 2019. Exceptional response and multisystem autoimmune-like toxicities associated with the same T cell clone in a patient with uveal melanoma treated with immune checkpoint inhibitors. Journal for immunotherapy of cancer, 7(1), 61.

Bowers JR, Valentine M, Harrison V, Fofanov VY, Gillece J, Delisle J, Patton B, Schupp J, Sheridan K, Lemmer D, Ostdiek S. 2019. Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role. mBio, 10(1), e02262-18.

Ware IM, Van Nuland ME, Schweitzer JA, Yang Z, Schadt CW, Sidak‐Loftis LC, Stone NE, Busch JD, Wagner DM, Bailey JK. 2019. Climate‐driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools. Global change biology.

Pearson T, Caporaso JG, Yellowhair M, Bokulich NA, Padi M, Roe DJ, Wertheim BC, Linhart M, Martinez JA, Bilagody C, Hornstra H. 2019. Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development. Cancer medicine.

Vogler AJ, Sahl JW, Leal NC, Sobreira M, Williamson CH, Bollig MC, Birdsell DN, Rivera A, Thompson B, Nottingham R, Rezende AM. 2019. A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic. PloS one, 14(1), e0209478.

Huebschman JJ, Hoerner SA, White JP, Kaarakka HM, Parise KL, Foster JT. 2019. Detection of Pseudogymnoascus destructans during Summer on Wisconsin Bats. Journal of Wildlife Diseases.

2018

Herold M, Narayanasamy S, Martinez Arbas S, Muller E, Kleine-Borgmann AL, Lebrun L, Roume H, Sheik A, Bessarab I, Williams R, Gillece J. 2018. Integrated time-resolved multi-omics for understanding microbial niche ecology.

Maxwell CS, Mattox K, Turissini DA, Teixeira MM, Barker BM, Matute DR. 2018. Gene exchange between two divergent species of the fungal human pathogen, Coccidioides. Evolution.

Hoyt JR, Langwig KE, White JP, Kaarakka HM, Redell JA, Kurta A, DePue JE, Scullon WH, Parise KL, Foster JT, Frick WF. 2018. Cryptic connections illuminate pathogen transmission within community networks. Nature, 1.

Bokulich NA, Dillon MR, Zhang Y, Rideout JR, Bolyen E, Li H, Albert PS, Caporaso JG. 2018. q2-longitudinal: Longitudinal and Paired-Sample Analyses of Microbiome Data. mSystems, 3(6), e00219-18.

Sinha R, Ahsan H, Blaser M, Caporaso JG, Carmical JR, Chan AT, Fodor A, Gail MH, Harris CC, Helzlsouer K, Huttenhower C. 2018. Next steps in studying the human microbiome and health in prospective studies. Bethesda, MD, May 16–17, 2017.

Koster KJ, Largen A, Foster JT, Drees KP, Qian L, Desmond E, Wan X, Hou S, Douglas JT. 2018. Genomic sequencing is required for identification of tuberculosis transmission in Hawaii. BMC infectious diseases, 18(1), 608.

Kaiser BLD, Hill KK, Smith TJ, Williamson CH, Keim P, Sahl JW, Wahl KL. 2018. Proteomic analysis of four Clostridium botulinum strains identifies proteins that link biological responses to proteomic signatures. PloS one, 13(10), e0205586.

Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet C, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y. 2018. QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science. No. e27295v1. PeerJ Preprints.

Boehmer T, Vogler AJ, Thomas A, Sauer S, Hergenroether M, Straubinger RK, Birdsell D, Keim P, Sahl JW, Williamson CH, Riehm JM. 2018. Phenotypic characterization and whole genome analysis of extended-spectrum beta-lactamase-producing bacteria isolated from dogs in Germany. PloS one, 13(10), e0206252.

Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C. 2018. Species-level functional profiling of metagenomes and metatranscriptomes. Nature methods, 1.

Baker AL, Pearson T, Sahl JW, Hepp C, Price EP, Sarovich DS, Mayo M, Tuanyok A, Currie BJ, Keim P, Warner J. 2018. Burkholderia pseudomallei distribution in Australasia is linked to paleogeographic and anthropogenic history. PLOS ONE, 13(11), e0206845.

Meise JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N. 2018. Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection. Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Engelthaler D, Driebe E, Kelley E, Keim P. 2018. U.S. Patent Application No. 16/005,012.

Gonzalez A, Navas-Molina JA, Kosciolek T, McDonald D, Vázquez-Baeza Y, Ackermann G, Bolyen E, Rideout JR, Janssen S, Swafford AD, Dillion M, Caporaso JG. 2018. Qiita: rapid, web-enabled microbiome meta-analysis. Nature methods, 15(10), 796-798.

Smith T, Williamson CH, Hill K, Sahl J, Keim P. 2018. Botulinum Neurotoxin-Producing Bacteria. Isn’t It Time that We Called a Species a Species?. mBio, 9(5), e01469-18.

Dool S, Altewischer A, Fischer NM, Drees KP, Foster JT, Fritze M, Puechmaille SJ. 2018. Mating type determination within a microsatellite multiplex for the fungal pathogen Pseudogymnoascus destructans, the causative agent of white-nose disease in bats. Conservation Genetics Resources, 1-4.

Kollath DR, de Melo Teixeira M, Barker BM. 2018. Advances in Genomics of Human Fungal Pathogens.

Beck L, Coates SG, Gee J, Hadfield T, Jackson P, Keim P, Lindler L, Olson V, Ostlund E, Roberto F, Samuel J. 2018. Performance Standards for Biological Threat Agent Assays for Department of Defense Applications. Journal of AOAC International.

Koster K, Largen A, Foster JT, Drees KP, Qian L, Desmond EP, Wan X, Hou S, Douglas JT. 2018. Whole genome SNP analysis suggests unique virulence factor differences of the Beijing and Manila families of Mycobacterium tuberculosis found in Hawaii. PloS one, 13(7), e0201146.

Fleshman A, Mullins K, Sahl J, Hepp C, Nieto N, Wiggins K, Hornstra H, Kelly D, Chan TC, Phetsouvanh R, Dittrich S. 2018. Comparative pan-genomic analyses of Orientia tsutsugamushi reveal an exceptional model of bacterial evolution driving genomic diversity. Microbial Genomics.

Mead HL, Teixeira MDM, Galgiani JN, Barker BM. 2018. Characterizing in vitro spherule morphogenesis of multiple strains of both species of Coccidioides. Medical Mycology.

Birdsell DN, Özsürekci Y, Rawat A, Aycan AE, Mitchell CL, Sahl JW, Johansson A, Colman RE, Schupp JM, Ceyhan M, Keim PS. 2018. BMC infectious diseases, 18(1), 319.

Lemmer D, Bowers J, Kelley E, Engelthaler D, Driebe E, Keim P. 2018. U.S. Patent Application No. 15/576,495.

Furstenau TN, Cocking JH, Sahl JW, Fofanov VY. 2018. Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites. BMC Bioinformatics, 19(1), 222.

Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV. 2018. Best practices for analysing microbiomes. Nature Reviews Microbiology, 1.

Kaufman EL, Stone NE, Scoles GA, Hepp CM, Busch JD, Wagner DM. 2018. Range-wide genetic analysis of Dermacentor variabilis and its Francisella-like endosymbionts demonstrates phylogeographic concordance between both taxa. Parasites & vectors, 11(1), 306.

Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Caporaso JG. 2018. Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome, 6(1), 90.

Vogtmann E, Hua X, Gail MH, Wan Y, Caporaso JG, Hicks B, Jones K, Hutchinson A, Dagnall C, Shi J, Freeman LB. 2018. Mo1923-Prospective Cohort Study of the Oral Microbiota and Colorectal Cancer Risk. Gastroenterology, 154(6), S-853.

Enger KS, Mitchell J, Murali B, Birdsell DN, Keim P, Gurian PL, Wagner DM. 2018. Evaluating the long-term persistence of Bacillus spores on common surfaces. Microbial Biotechnology.

Bowers JR, Driebe, EM, Albrecht V, McDougal LK, Granade M, Roe CC, Lemmer D, Rasheed JK, Engelthaler DM, Keim P, Limbago BM. 2018. Improved Subtyping of Staphylococcus aureus Clonal Complex 8 Strains Based on Whole-Genome Phylogenetic Analysis. mSphere, 3(3), e00464-17.

Lee k, Pletche, SD, Lynch SV, Goldberg AN, Cope EK. 2018. Heterogeneity of microbiota dysbiosis in chronic rhinosinusitis: potential clinical implications and microbial community mechanisms contributing to sinonasal inflammation. FCIM, 8, 168.

Williamson CH, Wagner DM, Keim P, Sahl JW. 2018. Developing Inclusivity and Exclusivity Panels for Testing Diagnostic and Detection Tools Targeting Burkholderia pseudomallei, the Causative Agent of Melioidosis. Journal of AOAC International.

Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R. 2018. Current understanding of the human microbiome. Nature medicine, 24(4), 392.

AlvaradoP, de Melo Teixeira M, Andrews L, Fernandez A, Santander G, Doyle A, Perez M, Yegres F, Barker BM. 2018. Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections. Emerging Microbes & Infections, 7(1), 46.

Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CH, Nottingham R, Sheridan K, Wagner DM, et al. 2018. Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection. Genome Announcements, 6(11), e00072-18.

Cope EK. 2018. Host-Microbe Interactions in Airway Disease: toward Disease Mechanisms and Novel Therapeutic Strategies. mSystems, 3(2), e00158-17.

Foster JT, Walker FM, Rannals BD, Sanchez DE. 2018. Population genetics of an island invasion by Japanese Bush-Warblers in Hawaii, USA. The Auk.

Woolbright SA, Rehill BJ, Lindroth RL, DiFazio SP, Martinsen GD, Zinkgraf MS, Allan GJ, Keim P, Whitham TG. 2018. Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: Implications for gene discovery. Ecol Evol.

Bowers JR, Parise KL, Kelley EJ, Lemmer D, Schupp JM, Driebe EM, Engelthaler DM, Keim P, Barker BM. 2018. Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay. Med.Mycol.

Palmer JM, Drees KP, Foster JT, & Lindner DL. 2018. Extreme sensitivity to ultraviolet light in the fungal pathogen causing white-nose syndrome of bats. Nature Commun. 9(1): 35.

Foster JT, Walker FM, Reid BD, Hussain MH, Drees KP, Tiller RV, Hoffmaster AR, AL-Rawahi A, Keim P, Saqib M. 2017. African lineage Brucella melitensis isolates from Omani livestock. Frontiers Microbiol. 8: 2702.

2017

Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O’Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell, DN. 2017. Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model. PLOS Negl Trop Dis. 11(12): e0006077.

Drees KP, Lorch JM, Puechmaille SJ, Parise KL, Wibbelt G, Hoyt JR, & Lindner DL, Sung K, Jargalsaikhanh A, Dalannasti M, Palmerj JM, et al. 2017. Phylogenetics of a fungal invasion: origins and widespread dispersal of White-Nose Syndrome. MBio. 8(6): e01941-17

Teixeira MM, Barker BM. Coccidioides and Coccidioidomycosis. 2017. Current Pro Med Mycol. 255-280.

Niño-Vega GA, Camacho E, Moreno ÁR, Tobón AM, Gómez BL, Teixeira MM, Barker BM. Paracoccidioides spp. and Paracoccidioidomycosis. 2017. Current Prog Med Mycol. 281-308.

Muller EE, Narayanasamy S, Zeimes M, Laczny CC, Lebrun LA, Herold M, Hicks ND, Gillece JD, Schupp JM, Keim P, Wilmes P. 2017. First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ. Standards Genomic Sciences. 12(1): 64.

Barker BM. The changing epidemiology and diagnosis of Valley Fever. 2017. Clin Microbiol Newsl. 39(20): 159-64.

Beare PA, Jeffrey BM, Martens CA, Pearson T, Heinzen RA. 2017. Draft genome sequences of historical strains of Coxiella burnetii isolated from cow’s milk and a goat placenta. Genome Announc. 5(39): e00985-17.

Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Anderson G, Birdsell DN, Rahalison L, et al. 2017. Temporal phylogeography of Yersinia pestis in Madagascar: insights into the long-term maintenance of plague. PLOS Negl Trop Dis. 11(9): e0005887.

Podnecky NL, Rhodes KA, Mima T, Drew HR, Chirakul S, Wuthiekanun V, Schupp JM, Sarovich DS, Currie BJ, Keim P, et al. 2017. Mechanisms of resistance to folate pathway inhibitors in Burkholderia pseudomallei: deviation from the norm. MBio. 8(5): e01357-17.

Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Caporaso JG. 2017. Optimizing taxonomic classification of marker gene sequences. PeerJ Preprints. 5: e3208v1.

Merkley ED, Sego LH, Lin A, Leiser OP, Deatherage Kaiser BL, Adkins JN, Keim PS, Wagner DM, Kreuzer HW. 2017. Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague. PLOS One. 12(8): e0183478.

Bernard RF, Willcox EV, Parise KL, Foster JF, McCracken GF. 2017. White-nose syndrome fungus, Pseudogymnoascus destructans, on bats captured emerging from caves during winter in the southeastern United States. BMC Zoology. 2(1): 12.

Gleditsch JM, Hruska AM, Foster JT. 2017. Connecting resource tracking frugivores to temporal variation in seed dispersal networks. Frontiers Ecol Evol. 5(98).

Jimenez V, Moreno R, Kaufman E, Hornstra H, Settles E, Currie BJ, Keim P, Monroy FP. 2017. Effects of binge alcohol exposure on Burkholderia thailandensis-Alveolar macrophage interaction. Alcohol.

Barragan V, Olivas S, Keim P, Pearson T. 2017. Critical knowledge gaps in our understanding about environmental cycling and transmission of Leptospira. AEM-01190.

Williamson CH, Vazquez AJ, Hill K, Smith TJ, Nottingham R, Stone NE, Sobek CJ, Cocking JH, Fernández RA, Caballero PA, Leiser OP. 2017. Differentiating botulinum-neurotoxin-producing Clostridia with a simple, multiplex PCR assay. AEM-00806.

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patan JSL, Priest M, Souza R, Ferreira KS. 2017. Exploring the genomic diversity of black yeasts and relatives of black yeasts and relatives of black yeasts and relatives (Chaetothyriales, Ascomycota). Stud Mycol. 86.

Venkateswaran K, Singh NK, Sielaff AC, Pope RK, Bergman NH, van Tongeren SP, Patel NB, Lawson PA, Satomi M, Williamson CH, Sahl JW. 2017. Non-toxin-producing Bacillus cereus strains belonging to the B. anthracis clade isolated from the International Space Station. MSystems. 2(3): e00021-17.

Mueller LO, Breza LC, Genung MA, Giardina CP, Stone NE, Sidak-Loftis LC, Busch JD, Wagner DM, Bailey JK, Schweitzer, JA. 2017. Ecosystem consequences of plant genetic divergence with colonization of new habitat. Ecosphere. 8(5).

Monroy FP, Jimenez V, Settles E, Currie B, Keim PS. 2017. A mouse model of acute ethanol and Burkholderia infection. J of Immunol. 198 (1)

Porty A, Jardine C, Pearson T, Menzies P, Jones-Bitton A, Schulte-Hostedde A. 2017. Prevalence and strain identification of Coxiella burnetii on dairy goat farms and in associated wildlife. Atrium.

Califf KJ, Schwarzberg-Lipson K, Garg N, Gibbons SM, Caporaso JG, Slots J, Cohen C, Dorrestein PC, Kelley ST. 2017. Multi-omics analysis of periodontal pocket microbial communities pre-and posttreatment. MSystems. 2(3): e00016-17.

Boulanger A, Hutchinson J, Ng WF, Ekkad SV, Keefe MJ, Xu W, Barker B, Hsu K. 2017. Experimental investigation of the onset of sand deposits on Hastelloy-X between 1,000 C and 1,100 C. Aeronaut. J, 1-13.

Neilson JW, Califf K, Cardona C, Copeland A, van Treuren W, Josephson KL, Knight R, Gilbert JA, Quade J, Caporaso JG, et al. 2017. Significant impacts of increasing aridity on the arid soil microbiome. MSystems. 2(3): e00195-16.

Vinocur JM, Terriquez J, Nienstadt L, Keim P. 2017. Transmission of Clostridium difficile across multiple healthcare facilities revealed through whole-genome sequencing. Am J Infect Control. 45(6): S15.

Cope EK, Goldberg AN, Pletcher SD, Lynch SV. 2017. Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences. Microbiome. 5(1): 53.

Antwerpen MH, Sahl JW, Birdsell D, Pearson T, Pearce MJ, Redmond C, Meyer H, Keim PS. 2017. Unexpected relations of historical anthrax strain. MBio. 8(2): e00440-17.

Keim PS, Walker DH, Zilinskas RA. 2017. Time to worry about anthrax again. Sci Am. 316(4): 70-75.

Pearson T, Caporaso JG, Yellowhair M, Martinez JA, Wertheim B, Roe D, Thompson-Canino P, Lance P. 2017. Abstract A18: gut microbiota changes in response to treatment with ursodeoxycholic acid (UDCA). Cancer Res. 77(3).

Barragan V, Nieto N, Keim P, Pearson T. 2017. Meta-analysis to estimate the load of Leptospira excreted in urine: beyond rats as important sources of transmission in low-income rural communities. BMC Res Notes. 10(1): 71.

Kang DW, Adams JB, Gregory AC, Borody T, Chittick L, Fasano A, Khoruts A, Geis E, Maldonado J, McDonough-Means S, et al. 2017. Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study. Microbiome. 5(1): 10.

Thompson GR, Barker BM, Wiederhold NP. 2017. Large scale evaluation of in vitro Amphotericin B, Triazole, and Echinocandin activity against Coccidioides species from United States institutions. Antimicrob Agents Chemother. AAC-02634.

Nualnoi T, Norris MH, Tuanyok A, Brett PJ, Burtnick MN, Keim PS, AuCoin, DP. 2017. Development of immunoassays for Burkholderia pseudomallei typical and atypical lipopolysaccharide strain typing. Am J Trop Med Hyg. 16-0308.

Gee J, Arce J, Beck LC, Blank TR, Blyn L, Cahall R, Clark AJ, Currie B, Damer K, Davenport M, et al. 2017. Standard method performance requirements (SMPRs) for DNA-based methods of detecting Burkholderia pseudomallei in field-deployable, Department of Defense aerosol collection devices. J AOAC Int. 100(1): 261-265.

2016

Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, et al. 2016. Burkholderia humptydooensis sp. nov., a new species related to Burkholderia thailandensis and the fifth member of the pseudomallei complex. Appl Environ Microbiol. AEM-02802.

Duggan AT, Perdomo MF, Piombino-Mascali D, Marciniak S, Poinar D, Emery MV, Buchmann JP, Duchene S, Jankauskas R, Humphreys M, et al. 2016. 17th century Variola virus reveals the recent history of Smallpox. Current Biology.

Dwibedi C, Birdsell D, Lärkeryd A, Myrtennäs K, Öhrman C, Nilsson E, Karlsson E, Hochhalter C, Rivera A, Maltinsky S, et al. 2016. Long-range dispersal moved Francisella tularensis into Western Europe from the East. Microb Genomics.

Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, et al. 2016. Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. Elife. 5: e12994.

Stone NE, Sidak-Loftis LC, Sahl JW, Vazquez AJ, Wiggins KB, Gillece JD, Hicks ND, Schupp JM, Busch JD, Keim P. 2016. More than 50% of clostridium difficile isolates from pet dogs in Flagstaff, USA, carry toxigenic genotypes. PLOS One. 11(10): e0164504.

Taylor DL, Walters WA, Lennon NJ, Bochicchio J, Krohn A, Caporaso JG, Pennanen T. 2016. Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing. Appl Environ Microbiol.

Vogler AJ, Nottingham R, Busch JD, Sahl JW, Shuey MM, Foster JT, Schupp JM, Smith SR, Rocke TE, Keim P. 2016. VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation. Infect Genet Evol. 45: 297-302.

Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K. 2016. The effects of signal erosion and core genome reduction on the identification of diagnostic markers. MBio. 7(5): e00846-16.

Walker FM, Williamson CHD, Sanchez DE, Sobek CJ, Chambers CL. 2016. Species from feces: order-wide identification of Chiroptera from guano and other non-invasive genetic samples. PLOS One. 11(9): e0162342.

Cope EK, Goldberg AN, Pletcher SD, Lynch SV. 2016. A chronic rhinosinusitis-derived isolate of Pseudomonas aeruginosa induces acute and pervasive effects on the murine upper airway microbiome and host immune response. Int Forum Allergy Rhinology.

Barragan V, Chiriboga J, Miller E, Olivas S, Birdsell D, Hepp C, Hornstra H, Schupp JM, Morales M, Gonzalez M, et al. 2016. High leptospira diversity in animals and humans complicates the search for common reservoirs of human disease in rural Ecuador. PLOS Negl Trop Dis. 10(9): e0004990.

Bowers JR, Lemmer D, Sahl JW, Pearson T, Driebe EM, Wojack B, Saubolle MA, Engelthaler D, Keim P. 2016. KlebSeq: A diagnostic tool for surveillance, detection, and monitoring of Klebsiella pneumoniae. J Clin Microbiol. JCM-00927.

Shabbir M, Aleem M, Javed S, Wagner DM, Keim PS, Eqani SAMAS, Bokhari H. 2016. Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution. J Infect Developing Countries. 10(07): 687-693.

Price EP, MacHunter B, Spratt BG, Wagner DM, Currie BJ, Sarovich DS. 2016. Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species. J Med Microbiol.

Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Davis CH, et al. 2016. NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats. Microb Genomics.

Karlsson E, Golovliov I, Lärkeryd A, Granberg M, Larsson E, Öhrman C, Niemcewicz M, Birdsell D, Wagner DM, Forsman M, et al. 2016. Clonality of erythromycin resistance in Francisella tularensis. J Antimicrob Chemother. dkw235.

Kersh GJ, Priestley RA, Hornstra HM, Self JS, Fitzpatrick KA, Biggerstaff BJ, Keim P, Pearson T, Massung RF. 2016. Genotyping and axenic growth of Coxiella burnetii isolates found in the United States environment. Vector-Borne and Zoonotic Dis. 10.1089/vbz.2016.1972.

Bokulich NA, Rideout JR, Mercurio WG, Wolfe B, Maurice CF, Dutton RJ, Turnbaugh PJ, Knight R, Caporaso JG. 2016. Mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking. PeerJ Prepr. e2065v1.

Olivas S, Hornstra H, Priestley RA, Kaufman E, Hepp C, Sonderegger DL, Handady K, Massung RF, Keim P, Kersh GJ, et al. 2016. Massive dispersal of Coxiella burnetii among cattle across the United States. Microb Genomics. 10.1099/mgen.0.000068.

Barragan V, Sahl JW, Wiggins K, Chiriboga J, Salinas A, Cantos NE, Loor MN, Intriago BI, Morales M, Trueba G, et al. 2016. Draft genome sequence of the first pathogenic Leptospira isolates from Ecuador. Genome Announcements. 4(3): e00271-16.

Laubitz D, Harrison CA, Midura-Kiela MT, Ramalingam R, Larmonier CB, Chase JH, Caporaso JG, Besselsen DG, Ghishan FK, Kiela PR. 2016. Reduced epithelial Na+/H+ exchange drives gut microbial dysbiosis and promotes inflammatory response in T cell-mediated murine colitis. PLoS One. 11(4): e0152044.

Cobble KR, Califf KJ, Stone NE, Shuey MM, Birdsell DN, Colman RE, Schupp JM, Aziz M, Van Andel R, Rocke TE, et al. 2016. Genetic variation at the MHC DRB1 locus is similar across Gunnison’s prairie dog (Cynomys gunnisoni) colonies regardless of plague history. Ecol Evol.

Teixeira MM, Barker BM. 2016. Use of population genetics to assess the ecology, evolution, and population structure of Coccidioides. EID, 22(6), 1022.

Williamson CH, Sahl JW, Smith TJ, Xie G, Foley BT, Smith LA, Fernandez RA, Lindstrom M, Korkeala H, Keim P, et al. 2016. Comparative genomic analyses reveal broad diversity in botulinum-toxin-producing Clostridia. BMC Genomics. 17.

Morrissey EM, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, Hayer M, McHugh TA, et al. 2016. Phylogenetic organization of bacterial activity. ISME J. Ismej.2016.28.

Sahl JW, Lemmer D, Travis J, Schupp J, Gillece J, Aziz M, Driebe EM, Drees K, Hicks N, Williamson CHD. 2016. The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets. BioRxiv. 037267.

Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin V, et al. 2016. Unprecedented melioidosis cases in northern Australia caused by an Asian Burkholderia pseudomallei strain identified by using large-scale comparative genomics. Appl Environ Microbiol. 82(3): 954-963.

Teixeira MDM, Patané JS, Taylor ML, Gómez BL, Theodoro RC, de Hoog S, Engelthaler DM, Zancopé-Oliveira RM, Felipe MS, Barker BM. 2016. Worldwide phylogenetic distributions and population dynamics of the genus Histoplasma. PLoS Negl Trop Dis. 10(6), e0004732.

Rideout JR, Chase JH, Bolyen E, Ackermann G, Gonzalez A, Knight R, Caporaso JG. 2016. Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets. PeerJ PrePrints. 4: e1670v1.

Engelthaler D, Roe CC, Litvintseva AP, Driebe EM, Schupp JM, Gade L, Waddell V, Komatsu K, Arathoon E, Logemann H, et al. 2016. Local population structure and patterns of Western Hemisphere dispersal for Coccidioides spp., the fungal cause of Valley Fever. BioRxiv: 024778.

2015

Turner CE, Abbott J, Lamagni T, Holden MTG, David S, Jones MD, Game L, Efstratiou A, Sriskandan, S. 2015. Emergence of a new highly successful acapsular group A. MBio.

Walters W, Hyde ER, Berg-Lyons D, Ackermann G, Humphrey G, Parada A, Gilbert JA, Jansson JK, Caporaso JG, Fuhrman JA, et al. 2015. Improved bacterial 16S rRNA gene (V4 and V4-5) and fungal internal transcribed spacer marker gene primers for microbial community surveys.

Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, et al. 2015. Diverse Burkholderia species isolated from soils in the southern United States with no evidence of B. pseudomallei. PloS one. 10(11): e0143254.

Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin Y, et al. 2015. Large-scale comparative genomics identifies unprecedented melioidosis cases in northern Australia caused by an Asian Burkholderia pseudomallei strain. Appl Environ Microbiol. AEM-03013.

Fuentes S, Barra B, Caporaso JG, Seeger M. 2015. From rare to dominant: a fine-tuned soil bacterial bloom during petroleum hydrocarbon bioremediation. Appl Environ Microbiol. 81(24).

Leal NC, Sobreira M, Araújo AFQ, Magalhães JLO, Vogler AJ, Bollig MC, Nottingham R, Keim P, Wagner DM, Almeida AMP. 2015. Viability of Yersinia pestis subcultures in agar-stabs. Lett Appl Microbiol.

Vogler AJ, Keim P, Wagner DM. 2015. A review of methods for subtyping Yersinia pestis: from phenotypes to whole genome sequencing. Infect Genet Evol. 37: 21-36.

Jung W, Barrett M, Brooks C, Rivera A, Birdsell DN, Wagner DM, Zenhausern F. 2015. An air-pressure-free elastomeric valve for integrated nucleic acid analysis by capillary electrophoresis. J Micromech Microeng. 25(12): 125004.

Chase JH, Bolyen ET, Rideout JR, Caporaso JG. 2015. Cual-id: globally unique, correctable, and human-friendly sample identifiers for comparative-omics studies. PeerJ Prepr. No. e1785.

Pullan ST, Pearson TR, Latham J, Mason J, Atkinson B, Silman NJ, Marston CK, Sahl JW, Birdsell D, Hoffmaster AR, et al. 2015. Whole genome sequencing investigation of animal-skin-drum-associated UK anthrax cases reveals evidence of mixed populations and relatedness to a US case. Microb Genomics.

Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SK, Pullan S, Antwerpen M, Bayer BN, et al. 2015. Whole genome analysis of injectional anthrax identifies two disease clusters spanning more than 13 years. Ebiomed.

Keim P, Driebe E, Engelthaler D, Bowers J. The Translational Genomics Research Institute (Phoenix, AZ, US), assignee. 2015. Allelic discrimination assays for MRSA strains. United States patent US 20,150,259,727.

Hungate BA, Mau RL, Schwartz E, Caporaso JG, Dijkstra P, van Gestel N, Koch BJ, Liu CM, McHugh TA, Marks JC, et al. 2015. Quantitative microbial ecology through stable isotope probing. Applied and environmental microbiology. AEM-02280.

Engelthaler D, Bowers J, Keim P. The Translational Genomics Research Institute (Phoenix, AZ, US), assignee. 2015. Methods and kits useful in the differentiation of Burkholderia species. United States patent US 20,150,252,408.

Bauer AE, Olivas S, Cooper M, Hornstra H, Keim P, Pearson T, Johnson AJ. 2015. Estimated herd prevalence and sequence types of Coxiella burnetii in bulk tank milk samples from commercial dairies in Indiana. BMC Vet Res. 11(1): 186.

Califf KJ, Keim PS, Wagner DM, Sahl JW. 2015. Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics. Microb Genomics.

Struve C, Roe CC, Stegger M, Stahlhut SG, Hansen DS, Engelthaler DM, Andersen PS, Driebe EM, Keim P, Krogfelt KA. 2015. Mapping the evolution of hypervirulent Klebsiella pneumoniae. mBio. 6(4): e00630-15.

Driebe EM, Sahl JW, Roe C, Bowers JR, Schupp JM, Gillece JD, Kelley E, Price LB, Pearson TR, Hepp CM, et al. 2015. Using whole genome analysis to examine recombination across diverse sequence types of Staphylococcus aureus. PLoS One. 10(7): e0130955.

Marzinelli EM, Campbell AH, Valdes EZ, VergÃ©s A, Nielsen S, Wernberg T, de Bettignies T, Bennett Jr S, Caporaso G, Thomas T, et al. 2015. Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography. Environ Microbiol.

Ginther JL, Mayo M, Warrington SD, Kaestli M, Mullins T, Wagner DM, Currie BJ, Tuanyok A, Keim P. 2015. Identification of Burkholderia pseudomallei near-neighbor species in the northern territory of Australia. PLoS Negl Trop Dis. 9(6): e0003892.

Olson N, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM. 2015. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Front Genet. 6(00235).

Roume H, Heintz-Buschart A, Muller EE, May P, Satagopam VP, Laczny CC, Narayanasamy S, Lebrun LA, Hoopmann MR, Schupp JM, et al. 2015. Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks. npj Biofilms Microbiomes. 1(15007).

Schupp JM, Colman RE, Buchhagen JL, Keim PS, Engelthaler DM, inventors. The Translational Genomics Research Institute (Phoenix, AZ, US), assignee. 2015 Jun 18. Primers, assays and methods for detecting Burkholderia pseudomallei and Burkholderia mallei. United States patent US 20,150,167,056.

Liu CM, Hungate BA, Tobian AA, Ravel J, Prodger JL, Serwadda D, Kigozi G, Galiwango RM, Nalugoda F, Keim P, et al. 2015. Penile microbiota and female partner bacterial vaginosis in Rakai, Uganda. MBio. 6(3): e00589-15.

Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, et al. 2015. Diverse genotypes of Yersinia pestis caused plague in madagascar in 2007. PLoS Negl Trop Dis. 9(6): e0003844.

Sahl JW, Sistrunk JR, Fraser CM, Hine E, Baby N, Begum Y, Luo Q, Sheikh A, Qadri F, Fleckenstein JM, et al. 2015. Examination of the enterotoxigenic Escherichia coli population structure during human infection. MBio. 6(3):e00501-15.

Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. 2015. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomics data. Biomed Cent. 7(52): doi:10.1186/s13073-015-0176-9.

Fouquier J, Rideout JR, Bolyen E, Chase JH, Shiffer A, McDonald D, Knight R, Caporaso JG, Kelley ST. 2015. Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses. PeerJ Prepr. 3:e1354.

He Y, Caporaso JG, Jiang XT, Sheng HF, Huse SM, Rideout JR, Edgar RC, Kopylova E, Walters WA, Knight R, et al. 2015. Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity. Microbiome. 3(1):20.

Langwig KE, Hoyt JR, Parise KL, Kath J, Kirk D, Frick WF, Foster JT, Kilpatrick AM. 2015. Invasion dynamics of white-nose syndrome fungus, midwestern United States, 2012-2014. Emerg Infect Dis. 21(6).

Smith CC, Snowberg LK, Caporaso JG, Knight R, Bolnick DI. 2015. Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota. ISME J.

Bokulich NA, Rideout JR, Kopylova E, Bolyen E, Patnode J, Ellett Z, McDonald D, Wolfe B, Maurice CF, Dutton RJ, et al. 2015. A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments. PeerJ PrePrints. 3: e1156.

Sahl JW, Allender CJ, Colman RE, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Carl Gelhaus H, Keim P, et al. 2015. Genomic characterization of Burkholderia pseudomallei Isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. PloS One. 10(3): e0121052.

Harbeck M, Seifert L, HÃ¤nsch S, Wagner DM, Birdsell D. Category archives: bioarchaeology. February.2015.

Karah N, Samuelsen Ø, Zarrilli R, Sahl JW, Wai SN, Uhlin BE. 2015. CRISPR-cas subtype I-Fb in Acinetobacter baumannii: evolution and utilization for strain subtyping. PloS One. 10(2): e0118205.

JW, Beckstrom-Sternberg SM, Babic-Sternberg J, Gillece JD, Hepp CM, Auerbach RK, Tembe W, Wagner DM, Keim PS, Pearson T. 2015. The In Silico Genotyper (ISG): an open-source pipeline to rapidly identify and annotate nucleotide variants for comparative genomics applications. BioRxiv. 015578.

Özsürekci Y, Birdsell DN, Çelik M, Karadağ-Öncel E, Johansson A, Forsman M, Vogler AJ, Keim P, Ceyhan M, Wagner DM. 2015. Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey. Emerg Infect Dis. 21(1):173.

Araya-Anchetta A, Busch JD, Scoles GA, Wagner DM. 2015. Thirty years of tick population genetics: A comprehensive review. Infection Genet Evol. 29:164-179.

Litvintseva AP, Marsden-Haug N, Hurst S, Hill H, Gade L, Driebe EM, Ralston C, Roe C, Barker BM, Goldoft M, et al. 2015. Valley Fever: Finding new places for an old disease: Coccidioides immitis found in Washington State soil associated with recent human infection. Clin Infect Dis. 60(1):e1-e3.

Price EP, Sarovich DS, Viberg L, Mayo M, Kaestli M, Tuanyok A, Foster JT, Keim P, Pearson T, Currie BJ. 2015. Whole-genome sequencing of Burkholderia pseudomallei isolates from an unusual melioidosis case identifies a polyclonal infection with the same multilocus sequence type. J Clin Microbiol. 53(1):282-286.

Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI. 2015. Comparative Analysis of Subtyping Methods against a whole-genome-sequencing standard for Salmonella enterica serotype enteritidis. J Clin Microbiol. 53(1):212-218.

McRobb E, Sarovich DS, Price EP, Kaestli M, Mayo M, Keim P, Currie BJ. 2015. Tracing melioidosis back to the source: using whole-genome sequencing to investigate an outbreak originating from a contaminated domestic water supply. J Clin Microbiol. 03453.

Austin CR, Goodyear AW, Bartek IL, Stewart A, Sutherland MD, Silva EB, Zweifel A, Vitko NP, Tuanyok A, Highnam G, et al. 2015. A Burkholderia pseudomallei colony variant necessary for gastric colonization. MBio. 6(1):e02462-14.

Holscher HD, Caporaso JG, Hooda S, Brulc JM, Fahey GC, Swanson KS. 2015. Fiber supplementation influences phylogenetic structure and functional capacity of the human intestinal microbiome: follow-up of a randomized controlled trial. Am J Clin Nutr. 101(1):55-64.

Kang DW, DiBaise JK, Ilhan ZE., Crowell MD, Rideout JR, Caporaso JG, Rittmann BE, Krajmalnik-Brown R. 2015. Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone. Anaerobe. 33:33-41

Sahl JW, Morris CR, Emberger J, Fraser CM, Ochieng JB, Juma J, Fields B, Breiman RF, Gilmour M, Nataro JP, et al. 2015. Defining the phylogenomics of Shigella species: A pathway to diagnostics. J Clin Microbiol. 03527.

Langwig KE, Frick WF, Reynolds R, Parise KL, Drees KP, Hoyt JR, Cheng TL, Kunz TH, Foster JT, Kilpatrick AM. 2015. Host and pathogen ecology drive the seasonal dynamics of a fungal disease, white-nose syndrome. Proc R Soc London Ser B: Biol Sci. 282(1799):20142335.

Bernard RF, Foster JT, Willcox EV, Parise KL, McCracken GF. 2015. Molecular Detection of the causative agent of white-nose syndrome on Rafinesque’s Big-eared Bats (Corynorhinus rafinesquii) and two species of migratory bats in the Southeastern USA. J Wildl Dis.

2014

Rothrock MJ, Hiett KL, Gamble J, Caudill AC, Cicconi-Hogan KM, Caporaso JG. 2014. A Hybrid DNA Extraction Method for the Qualitative and Quantitative Assessment of Bacterial Communities. Poultry Production Samples. J. Vis. Exp. (94), e52161, doi:10.3791/52161.

Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P. 2014. Francisella tularensis subsp. tularensis group AI, United States. Emerging Infectious Diseases, 20(5), 861.

Settles EW, Moser LA, Harris TH, Knoll JL. 2014. Toxoplasma gondii upregulates interleukin-12 to prevent Plasmodium berghei-induced experimental cerebral malaria. Infect Immun. 82(3):1343-1353.

Podin Y, Sarovich DS, Price EP, Kaestli M, Mayo M, Hii K, Ngian H, Wong S, Wong I, Wong J, et al. 2014. Burkholderia pseudomallei isolates from Sarawak, Malaysian Borneo, are predominantly susceptible to aminoglycosides and macrolides. Antimicrob Agents Chemother. 58(1):162-166.

Wagner D., Keim PS, Scholz HC, Holmes EC, Poinar H. 2014. Yersinia pestis and the three plague pandemics-Authors’ reply. Lancet Infect Dis. 14(10):919.
Hanczaruk M, Reischl U, Holzmann T, Frangoulidis D, Wagner DM, Keim PS, Antwerpen MH, Meyer H, Grass G. 2014. Injectional anthrax in heroin users, Europe, 2000-2012. Emerg Infect Dis. 20(2): 322.

Pearson T, Hornstra HM, Hilsabeck R, Gates LT, Olivas SM, Birdsell DM, Hall CM, German S, Cook JM, Seymour ML, et al. 2014. High prevalence and two dominant host-specific genotypes of Coxiella burnetii in US milk. BMC Microbiol. 14(1):41.

Casadevall A, Enquist L, Imperiale MJ, Keim P, Osterholm MT, Relman DA. 2014. Redaction of sensitive data in the publication of dual use research of concern. MBio. 5(1): e00991-13.

Wattam AR, Foster JT, Mane SP, Beckstrom-Sternberg SM, Beckstrom-Sternberg JM, Dickerman AW, Keim P, Pearson T, Shukla M, Ward DV, et al. 2014. Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence. J Bacteriol. 196(5):920-930.

Shuey MM, Drees KP, Lindner DL, Keim P, Foster JT. 2014. Highly sensitive quantitative PCR for the detection and differentiation of Pseudogymnoascus destructans and other Pseudogymnoascus species. Appl Environ Microbiol. 80(5):1726-1731.

Stone JK, Heiss C, Wang Z, Black I, Grasso SA, Koppisch AT, Parastoo A, Keim P, Tuanyok A. 2014. Structural characterization of polysaccharides expressed by Burkholderia oklahomensis E0147. Carbohydr Res. 386:68-72.

Sahl JW, Caporaso JG, Rasko DA, Keim P. 2014. The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ. 2:e332.

Orata FD, Keim PS, Boucher Y. 2014. The 2010 cholera outbreak in Haiti: how science solved a controversy. PLoS Pathog. 10(4):e1003967.

Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, et al. 2014. Yersinia pestis and the Plague of Justinian 541-543 AD: a genomic analysis. Lancet Infect Dis. 14(4):319-326.

Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennas K, et al. 2014. Francisella tularensis subsp. tularensis group AI, United States. Emerg Infect Dis. 20(5):861.

Sulyok KM, Kreizinger Z, Hornstra HM, Pearson T, Szigeti A, Dán Á, Balla E, Keim PS, Gyuranecz, M. 2014. Genotyping of Coxiella burnetii from domestic ruminants and human in Hungary: indication of various genotypes. BMC Vetern Res. 10(1):107.

Kelley EJ, Driebe EM, Etienne K, Brandt ME, Schupp JM, Gillece JD, Trujillo JS, Lockhart SR, Deak E, Keim PS, et al. 2014. Real-time PCR assays for genotyping of Cryptococcus gattii in North America. BMC Microbiol. 14(1):125.

Wang Y, Peng Y, Hai R, Xia L, Li H, Zhang Z, Cai H, Liang Y, Shen X, Yu D, et al. 2014. Diversity of Francisella tularensis subsp. holarctica lineages, China. Emerg Infect Dis. 20(7):1191.

Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, et al. 2014. Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes. PloS One. 9(7):e102651.

Gyuranecz M, Sulyok KM, Balla E, Mag T, Balï¿½zs A, Simor Z, Denes B, Hornok S, Bajnoczi P, Hornstra HM, et al. 2014. Q fever epidemic in Hungary, April to July 2013. Euro Surveill. 19(30).

Engelthaler DM, Hicks ND, Gillece JD, Roe CC, Schupp JM, Driebe EM, Gilgado F, Carriconde F, Trilles L, Firacative C, et al. 2014. Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal. MBio. 5(4):e01464-14.

Litvintseva AP, Hurst S, Gade L, Frace MA, Hilsabeck R, Schupp JM, Gillece JD, Roe C, Smith D, Keim P, et al. 2014. Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections. J Clin Microbiol. 52(9):3216-3222.

Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS. 2014. TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations. PloS One. 9(9):e107964.

Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, et al. 2014. Genotyping of Burkholderia mallei from an outbreak of Glanders in Bahrain suggests Mmultiple introduction events. PLoS Negl Trop Dis. 8(9):e3195.

Van Rie A, Moultrie H, Rappuoli R, Graham SM, Donald PR, Markowitz LE, Bockarie, et al. 2014. Neglected tropical diseases: no longer someone else’s problem. Lancet Infect Dis. 14(10):899-1022.

Mau RL, Liu CM, Aziz M, Schwartz E, Dijkstra P, Marks JC, Price LB, Keim P, Hungate BA. 2014. Linking soil bacterial biodiversity and soil carbon stability. ISME J. 1-4.

Okinaka RT, Challacombe J, Drees K, Birdsell DN, Janke N, Naumann A, Seymour M, Hornstra H, Schupp J, Sahl J, et al. 2014. Genome sequence of Bacillus anthracis STI, a Sterne-like Georgian/Soviet vaccine strain. Genome Ann. 2(5):e00853-14.

Wendt JM, Kaul D, Limbag BM, Ramesh M, Cohle S, Denison AM, Driebe EM, Rasheed JK, Zaki SR, Blau DM, et al. 2014. Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing. Am J Transpl. 14(11):2633-2639.

Rawat A, Engelthaler DM, Driebe EM, Keim P, Foster JT. 2014. MetaGeniE: characterizing human clinical samples using deep metagenomic sequencing. PloS One. 9(11):e110915.

Wahab T, Birdsell DN, Hjertqvist M, Mitchell CL, Wagner DM, Keim PS, Hedenström I, Löfdahl S. 2014. Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden. PloS One. 9(11):e112167.

Muller EE, Pinel N, Laczny CC, Hoopmann MR, Narayanasamy S, Lebrun LA, Roume H, Lin J, May P, Hicks ND, et al. 2014. Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage. Nat Commun. 5(5603).

Johansson A, Lärkeryd A, Widerström M, Mörtberg S, Myrtännäs K, Öhrman C, Birdsell D, Keim P, Wagner DM, Forsman M, et al. 2014. An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis. Clin Infect Dis. 59(11):1546-1553.

Eppinger M, Pearson T, Koenig SS, Pearson O, Hicks N, Agrawal S, Sanjar F, Galens K, Daugherty S, Crabtree J, et al. 2014. Genomic epidemiology of the Haitian cholera outbreak: a single introduction followed by rapid, extensive, and continued spread characterized the onset of the epidemic. MBio. 5(6):e01721-14.

Busch JD, Stone NE, Nottingham R, Araya-Anchetta A, Lewis J, Hochhalter C, Giles JR, Gruendike J, Freeman J, Buckmeier G, et al. 2014. Widespread movement of invasive cattle fever ticks (Rhipicephalus microplus) in southern Texas leads to shared local infestations on cattle and deer. Parasite Vect. 7(188):188.

Giles JR, Peterson AT, Busch JD, Olafson PU, Scoles GA, Davey RB, Pound JM, Kammlah DM, Lohmeyer KH, Wagner DM. 2014. Invasive potential of cattle fever ticks in the southern United States. Parasite Vect. 7:189.

Sackett LC, Seglund A, Guralnick RP, Mazzella MN, Wagner DM, Busch JD, Martin AP. 2014. Evidence for two subspecies of Gunnison’s prairie dogs (Cynomys gunnisoni), and the general importance of the subspecies concept. Biol Conserv. 174:1-11.

Stone NE, Olafson PU, Davey RB, Buckmeier G, Bodine D, Sidak-Loftis LC, Giles JR, Duhaime R, Miller RJ, Mosqueda J, et al. 2014. Multiple mutations in the para-sodium channel gene are associated with pyrethroid resistance in Rhipicephalus microplus from the United States and Mexico. Parasites Vect. 7(1):456.

Schwarzberg K, Le R, Bharti B, Lindsay S, Casaburi G, Salvatore F, Saber MH, Alonaizan F, Slots J, Gottlieb RA, et al. 2014. The personal human oral microbiome obscures the effects of treatment on periodontal disease. PloS One. 9(1):e86708.

Holscher H, Caporaso J, Brulc J, Swanson K. 2014. Fiber supplementation influences the phylogenetic structure and functional capacity of the adult human intestinal microbiome (637.1). FASEB J. 28(1 Supplement): 637-1.

Goodrich JK, Di Rienzi SC, Poole AC, Koren O, Walters WA, Caporaso JG, Knight R, Ley RE. 2014. Conducting a microbiome study. Cell. 158(2):250-262.

Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, et al. 2014. Consistent, comprehensive and computationally efficient OTU definitions. PeerJ. 2.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R. 2014. Individual diet has sex-dependent effects on vertebrate gut microbiota. Nat Commun. 5.

Feng Y, Grogan P, Caporaso JG, Zhang H, Lin X, Knight R, Chu H. 2014. PH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils. Soil Biol Biochem. 74:193-200.

Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Knight R, Caporaso JG, Svanbäck R. 2014. Individuals’ diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch). Ecol Let. 17(8):979-987.

Rideout JR, He Y, Navas-Molina JA, Walters WA, Ursell LK, Gibbons SM, Chase J, McDonald D, Gonzalez A, Robbins-Pianka A, et al. 2014. Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences. PeerJ. 2:e545.

Shade A, Jones SE, Caporaso JG, Handelsman J, Knight R, Fierer N, Gilbert JA. 2014. Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity. MBio. 5(4):e01371-14.

Bolnick DI, Snowberg LK, Caporaso JG., Lauber C, Knight R, Stutz WE. 2014. Major histocompatibility complex class IIb polymorphism influences gut microbiota composition and diversity. Molec Ecol. 23(19):4831-4845.

Huttenhower C, Knight R, Brown CT, Caporaso JG, Clemente JC, Gevers D, Franzosa EA, Kelley ST, Knights D, Ley RE, et al. 2014. Advancing the microbiome research community. Cell. 159(2):227-230.

Flores GE, Caporaso JG, Henley JB, Rideout JR, Domogala D, Chase J, Leff JW, Vazquez-Baeza Y, Gonzalez A, Knight R, et al. 2014. Temporal variability is a personalized feature of the human microbiome. Genome Biol. 15(12):531.

Rothrock Jr MJ, Hiett KL, Gamble J, Caudill AC, Cicconi-Hogan KM, Caporaso JG. 2014. A hybrid DNA extraction method for the qualitative and quantitative assessment of bacterial communities from poultry production samples. JoVE. (94):e52161-e52161.

Mohawk KL, Poly F, Sahl JW, Rasko DA, Guerry P. 2014. High frequency, spontaneous motA mutations in campylobacter jejuni Strain 81-176. PloS One. 9(2):e88043.

Hazen TH, Zhao L, Sahl JW, Robinson G, Harris AD, Rasko DA, Johnson JK. 2014. Characterization of Klebsiella sp. strain 10982, a colonizer of humans that contains novel antibiotic resistance alleles and exhibits genetic similarities to plant and clinical Klebsiella isolates. Antimicrob Agents Chemother. 58(4):1879-1888.

Heitkamp R, Sahl J, Summers A, Roth AL, Kirkup BC. 2014. Resolving antagonistic interactions among clinical isolates of Acinetobacter baumannii with phylogenetic analysis. PeerJ. (1):e436.

Gee JE, Allender CJ, Tuanyok A, Elrod MG, Hoffmaster AR. 2014. Burkholderia pseudomallei type G in Western Hemisphere. Emerg Infect Dis. 20(4):682.

Rowe DJ, al-Malki S, Abduljabar AA, Porch A, Barrow DA, Allender CJ. 2014. Improved split-ring resonator for microfluidic sensing. IEEE Trans Microwave Theory Tech. 62(3):689-699.

Poulsen KP, Hutchins FT, McNulty CM, Tremblay M, Zabala C, Barragan V, Lopez L, Trueba G, Bethel JW. 2014. Brucellosis in dairy cattle and goats in Northern Ecuador. Am J Trop Med Hyg. 90(4):712-715.

Settles EW, Kink JA, Talaat A. 2014. Attenuated strains of Mycobacterium avium subspecies paratuberculosis as vaccine candidates against Johne’s disease. Vaccine. 32(18):2062-2069.

2013

Harbeck, M., Seifert, L., et al. 2013. Yersinia pestis DNA from Skeletal Remains from the 6th Century AD Reveals Insights into Justinianic Plague. PLoS Pathogens 9(5): e1003349.

Birdsell, D.N., Antwerpen, M., et al. 2013. Draft genome sequences of two Bulgarian Bacillus anthracis strains. Genome Announcements 1(2): e00152-13.

Liu, C.M., Hungate, B.A., et al. 2013. Male Circumcision Significantly Reduces Prevalence and Load of Genital Anaerobic Bacteria. mBio 4(2): e00076-13.

Wymore, A.S., Compson, Z.G., et al. 2013. Contrasting rRNA gene abundance patterns for aquatic fungi and bacteria in response to leaf-litter chemistry. Freshwater Science 32(2): 663-672.

Gyuranecz, M., Rannals, B.D., et al. 2013. Within-host evolution of Brucella canis during a canine brucellosis outbreak in a kennel. BMC Veterinary Research 9(1): 76.

Leiser, O.P., Corn, J.L., et al. 2013. Feral swine brucellosis in the United States and prospective genomic techniques for disease epidemiology. Veterinary Microbiology.

Trueba, G., Garcés, V., et al. 2013. Escherichia coli O157: H7 in Ecuador: Animal Reservoirs, Yet No Human Disease. mBio 4(1): e00623-12.

Vogler, A.J., Chan, F., et al. 2013. A Decade of Plague in Mahajanga, Madagascar: Insights into the Global Maritime Spread of Pandemic Plague. mBio 4(1): e00623-12.

Duncan, D.D., Vogler, A.J., et al. 2013. Identification and typing of Francisella tularensis with a highly automated genotyping assay. Letters in Applied Microbiology 56(2): 128-134.

Sahl, J.W., Gillece, J.D., et al. 2013. Evolution of a Pathogen: A Comparative Genomics Analysis Identifies a Genetic Pathway to Pathogenesis in Acinetobacter. PLoS One 8(1): e54287.

Perego, U.A., Achilli, A., et al. 2013. The Mountain Meadows Massacre and “poisoned springs”: scientific testing of the more recent, anthrax theory. International Journal of Legal Medicine 127(1): 77-83.

Limmathurotsakul, D., Dance, D.A.B., et al. 2013. Systematic Review and Consensus Guidelines for Environmental Sampling of Burkholderia pseudomallei. PLoS Neglected Tropical Diseases 7(3): e2105.

Hall, C.M., Busch, J.D., et al. 2013. Genetic characterization of Theileria equi infecting horses in North America: evidence for a limited source of US introductions.. Parasites & Vectors 6(1): 35.

Araya-Anchetta, A., Scoles, G.A., et al. 2013. Hybridization in natural sympatric populations of Dermacentor ticks in northwestern North America. Ecology and Evolution 3(3): 714-724.

Qu, P.H., Chen, S.Y., et al. 2013. Francisella guangzhouensis sp. nov., isolated from air conditioning systems. International Journal of Systemic and Evolutionary Microbiology.

Gyuranecz, M., Foster, J.T., et al. 2013. Worldwide Phylogenetic Relationship of Avian Poxviruses. Journal of Virology.

2012

Keim, P., Zoloth, L. 2012. Designer Life: Promises and Perils. DeVos Medical Ethics Colloquy.

Sarovich, Derek S., Price, Erin P., et al. 2012. Development of ceftazidime resistance in an acute Burkholderia pseudomallei infection. Infection and Drug Resistance 2012(5): 129-132.

Zandt, K.E., Tuanyok, A., et al. 2012. An objective approach for Burkholderia pseudomallei strain selection as challenge material for medical countermeasures efficacy testing. Frontiers in Cellular and Infection Microbiology 2012(2): 120.

Tuanyok, A., Stone, J.K., et al. 2012. The genetic and molecular basis of O-antigenic diversity in Burkholderia pseudomallei lipopolysachharide. PLoS Neglected Tropical Diseases 6(1): e1453.

Ruifu, Y., & Keim, P. 2012. Microbial Forensics: A Powerful Tool for Pursuing Bioterrorism Perpetrators and the Need for an International Database. Journal of Bioterrorism and Biodefense S3:007.

Bowers, J.R., Driebe, E.M., et al. 2012. Dominance of multidrug restistant CC271 clones in macrolide-resistant Streptococcus pneumoniae in Arizona. BMC microbiology 12(1): 12.

Keim, P. 2012. Reasons for proposed redaction of flu paper. Nature 482(7384): 156-157.

Berns, K.I., Casadevall, A., et al. 2012. Policy: adaptations of avian flu virus are a cause for concern. Nature 482(7384): 153-154.

Casadevall, A., Shenk, T., et al. 2012. The H5N1 manuscript redaction controversy. mBio 3(1): e00022-12.

Gyuranecsz, M., Birdsell, D.N., et al. 2012. Phylogeography of Francisella tularensis subsp. holarctica, Europe. Emerging Infectious Diseases 18(2): 290.

Berns, K.I., Casadevall, A., et al. 2012. Adaptations of avian flu virus are a cause for concern. Science 335(6069): 660-661.

Sarovich, D.S., Price, E.P., et al. 2012. Characterization of ceftazidime resistance mechanisms in clinical isolates of Burkholderia pseudomallei from Australia. PLoS One 7(2): e30789.

Keim, P. 2012. The NSABB recommendations: rationale, impact, and implications. mBio 3(1): e00021-12.

Price, L.B., Stegger, M., et al. 2012. Staphylococcus aureus CC398: host adaptation and emergence of methicillin resistance in livestock. mBio 3(1): e00305-11.

Birdsell, D.N., Pearson, T., et al. 2012. Melt analysis of mismatch amplification mutation assays (Melt-MAMA): a functional study of a cost-effective SNP genotyping assay in bacterial models. PLoS One 7(3): e32866.

Qiu, S., Xu, X., et al. 2012. Emergence of resistance to fluoroquinolones and third?generation cephalosporins in Shigella flexneri subserotype 1c isolates from China. Clinical Microbiology and Infection 18(4): e95-98.

Liu, C., Aziz, M., et al. 2012. BactQuant: An enhanced broad-coverage bacterial quantitative real-time PCR assay. BMC Microbiology 12(1): 56.

Nikolakakis, K., Amber, S., et al. 2012. The toxin/immunity network of Burkholderia pseudomallei contact-dependent growth inhibition (CDI) systems. Molecular Microbiology 84(3): 516-529.

Price, E.P., Dale, J.L., et al. 2012. Development and Validation of Burkholderia pseudomallei-Specific Real-Time PCR Assays for Clinical, Environmental or Forensic Detection Applications. PLoS One 7(5): e37723.

Kaestli, M., Richardson, L.J., et al. 2012. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. Journal of Clinical Microbiology 50(6): 2059-2062.

Frerichs, R.R., Keim, P.S., et al. 2012. Nepalese origin of cholera epidemic in Haiti. Clinical Microbiology and Infection 18(6): e158-163.

Keim, P. 2012. Plague: The Emergence of a Highly Fit Clonal Pathogen that Altered the History of Mankind (7th Annual SFAF Meeting, 2012). DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Los Alamos National Lboratory.

Foster, J., Price, L., et al. 2012. Genotyping of Brucella species using clade specific SNPs. BMC Microbiology 12(1): 110.

Kaestli, M., Schmid, M., et al. 2012. Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environmental Microbiology 14(8): 2058-2070.

Price, E.P., Seymour, M.L., et al. 2012. Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe. Emerging Infectious Diseases 18(8): 1307.

Engelthaler, D., Driebe, E., and Keim, P. 2012. METHOD OF DETECTING COCCIDIOIDES SPECIES. U.S. Patent no. 20,120,264,135.

Aarestrup, F.M., Brown, E.W., et al. 2012. Integrating genome-based informatics to modernize global disease monitoring, information sharing, and response. Emerging Infectious Diseases 18(11): e1.

Stone, J.K., Mayo, M., et al. 2012. Detection of Burkholderia pseudomallei O-antigen serotypes in near-neighbor species. BMC Microbiology 12(1): 250.

Frerichs, R.R., Boncy, J., et al. 2012. Source attribution of 2010 cholera epidemic in Haiti. Proceedings of the National Academy of Sciences 109(47): e3208.

Etienne, K.A., Gillece, J., et al. 2012. Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011. PLoS One 7(11): e49989.

Liu, C.M., Kachur, S. 2012. FungiQuant: A broad-coverage fungal quantitative real-time PCR assay. BMC Microbiology 12(1): 1-11.

Muller, E.E.L., Pinel, N., et al. 2012. Genome Sequence of “Candidatus Microthrix parvicella” Bio17-1, a Long-Chain-Fatty-Acid-Accumulating Filamentous Actinobacterium from a Biological Wastewater Treatment Plant. Journal of Bacteriology 194(23): 6670-6671.

Richardson, L.J., Kaestli, M., et al. 2012. Towards a rapid molecular diagnostic for melioidosis: comparison of DNA extraction methods from clinical specimens. Journal of Microbiological Methods 88(1): 179-181.

2011

Baker, A., T. Pearson, et al. 2011. Molecular Phylogeny of Burkholderia pseudomallei from a Remote Region of Papua New Guinea. PLoS One 6(3): e18343.

Engelthaler, D. M., T. Chiller, et al. 2011. Next-generation sequencing of Coccidioides immitis isolated during cluster investigation. Emerg Infect Dis 17(2): 227-32.

Hendriksen, R. S., L. B. Price, et al. 2011. Population genetics of Vibrio cholerae from Nepal in 2010: evidence on the origin of the Haitian outbreak. MBio 2(4): e00157-11.

James, S. H., C. B. Hartline, et al. 2011. Cyclopropavir Inhibits the Normal Function of the Human Cytomegalovirus UL97 Kinase. Antimicrob Agents Chemother 55(10): 4682-91.

Kang, Y., M. H. Norris, et al. 2011. Knockout and pullout recombineering for naturally transformable Burkholderia thailandensis and Burkholderia pseudomallei. Nat Protoc 6(8): 1085-104.

Liu, C. M., M. K. Cosetti, et al. 2011. The otologic microbiome: a study of the bacterial microbiota in a pediatric patient with chronic serous otitis media using 16SrRNA gene-based pyrosequencing. Arch Otolaryngol Head Neck Surg 137(7): 664-8.

Rasko, D. A., P. L. Worsham, et al. 2011. Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation. Proc Natl Acad Sci U S A 108(12): 5027-32.

Vogler, A. J., D. N. Birdsell, et al. 2011. Phylogeography of Francisella tularensis ssp. holarctica in France. Letters in Applied Microbiology 52(2): 177-180.

Wagner, D. M., J. Runberg, et al. 2011. No resistance plasmid in Yersinia pestis, North America. Emerg Infect Dis 16(5): 885-7.

Waters, A. E., T. Contente-Cuomo, et al. 2011. Multidrug-Resistant Staphylococcus aureus in US Meat and Poultry. Clin Infect Dis 52(10): 1227-30.

Davis, T. S., R. W. Hofstetter, et al. 2011. Interactions Between the Yeast Ogataea pini and Filamentous Fungi Associated with the Western Pine Beetle. Microbial Ecology 61(3): 626-634.

Chanturia, G., D. N. Birdsell, et al. 2011. Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia. Bmc Microbiology 11.

Stewart, T., D. M. Engelthaler, et al. 2011. Epidemiology and Investigation of Melioidosis, Southern Arizona. Emerging Infectious Diseases 17(7): 1286-1288.

Mukhopadhyay, C., M. Kaestli, et al. 2011. Short Report: Molecular Characterization of Clinical Burkholderia pseudomallei Isolates from India. American Journal of Tropical Medicine and Hygiene 85(1): 121-123.

Rivarola, M., J. T. Foster, et al. 2011. Castor Bean Organelle Genome Sequencing and Worldwide Genetic Diversity Analysis. Plos One 6(7).

Paxton, E. H., P. Unitt, et al. 2011. Winter Distribution of Willow Flycatcher Subspecies. Condor 113(3): 608-618.

Price, Lance B., Cindy M. Liu, Yelena M. Frankel, Johan H. Melendez, Maliha Aziz, Jordan Buchhagen, Tania Contente-Cuomo, David Engelthaler, Paul S. Keim, Jacques Ravel, Gerald S. Lazarus, and Jonathan M. Zenilman. 2011. Macro-scale spatial variation in chronic wound microbiota: a cross-sectional study. Wound Repair and Regeneration. 19:80-8. doi: 10.1111/j.1524-475X.2010.00628.x.

Challacombe, Jean F., Richard T. Okinaka, A. Christine Munk, Thomas S. Brettin, Paul Keim. 2011. Bacillus anthracis. Chaper 12 In “Genomes of Food- and Water-Borne Pathogens” ed eds. Pina Fratamico, Sophia Kathariou and Yanhong Liu. ASM Press. p. 165-183.

Vogler, Amy J., Fabien Chan, David M. Wagner, Philippe Roumagnac, Judy Lee, Roxanne Nera, Mark Eppinger, Jacques Ravel, Lila Rahalison, Stephen M. Beckstrom-Sternberg, Mark Achtman, Suzanne Chanteau, Paul Keim. 2011. Phylogeography and Molecular Epidemiology of Yersinia pestis in Madagascar. PLoS Neg. Trop. Dis. In press.

Okinaka, R. T., E. P. Price, S. R. Wolken, J. M. Gruendike, W-K. Chung, T. Pearson, J. G. Xie, C. Munk, K. K. Hill, J. Challacombe, B. E. Ivins, J. M. Schupp, S. Beckstrom-Sternberg, A. Friedlander, and P. Keim. 2011. An Attenuated Strain of Bacillus anthracis (CDC 684), has a Large Chromosomal Inversion and Altered Growth Kinetics. BMC Microbiology. Tentative acceptance 8/11.

Engelthaler, David M., Jolene Bowers, Jennifer Ginther, Heidie M. Hornstra O’Neill, James A. Schupp, Talima Pearson, Tasha Stewart, Kenneth Komatsu, Rebecca Sunenshine, Eric Wangsness, Victor Waddell, David Blaney, David M. Wagner, Bart Currie, Paul Keim, Apichai Tuanyok. 2011. Molecular investigations of an autochthonous case of melioidosis in Southern AZ, USA. PLoS Neg. Trop. Dis. In press.

Hornstra, H. M., R. A. Priestley, et al. 2011. Rapid Typing of Coxiella burnetii. Plos One 6(11).

Busch, J. D., R. van Andel, et al. 2011. Population Differences in Host Immune Factors May Influence Survival of Gunnison’s Prairie Dogs (Cynomys gunnisoni) during Plague Outbreaks. Journal of Wildlife Diseases 47(4): 968-973.

Dale J, Price EP, Hornstra H, Busch JD, Mayo M, Godoy D, Wuthiekanun V, Baker A, Foster JT, Wagner DM, Tuanyok A, Warner J, Spratt BG, Peacock SJ, Currie BJ, Keim P, Pearson T. 2011. Epidemiological Tracking and Population Assignment of the Non-Clonal Bacterium, Burkholderia pseudomallei. PLoS Negl Trop Dis. 2011 Dec;5(12):e1381.

Kaestli M, Schmid M, Mayo M, Rothballer M, Harrington G, Richardson L, Hill A, Hill J, Tuanyok A, Keim P, Hartmann A, Currie BJ. 2011. Out of the ground: aerial and exotic habitats of the melioidosis bacterium Burkholderia pseudomallei in grasses in Australia. Environ Microbiol. 2011 Dec 19.

Marston CK, Allen CA, Beaudry J, Price EP, Wolken SR, Pearson T, Keim P, Hoffmaster AR. 2011. Molecular epidemiology of anthrax cases associated with recreational use of animal hides and yarn in the United States. PLoS One. 2011;6(12):e28274.

Gillece JD, Schupp JM, Balajee SA, Harris J, Pearson T, Yan Y, Keim P, Debess E, Marsden-Haug N, Wohrle R, Engelthaler DM, Lockhart SR. 2011. Whole Genome Sequence Analysis of Cryptococcus gattii from the Pacific Northwest Reveals Unexpected Diversity. PLoS One. 2011;6(12):e28550.

Richardson LJ, Kaestli M, Mayo M, Bowers JR, Tuanyok A, Schupp J, Engelthaler D, Wagner DM, Keim PS, Currie BJ. 2011. Towards a rapid molecular diagnostic for melioidosis: Comparison of DNA extraction methods from clinical specimens. J Microbiol Methods. 2012 Jan;88(1):179-81.

Hansen CM, Vogler AJ, Keim P, Wagner DM, Hueffer K. 2011. Tularemia in Alaska, 1938 – 2010. Acta Vet Scand. 2011 Nov 18;53:61.

Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. 2011. Reply to “South Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain”. MBio. 2011 Nov 1;2(6):e00245-11.

Engelthaler DM, Bowers J, Schupp JA, Pearson T, Ginther J, Hornstra HM, Dale J, Stewart T, Sunenshine R, Waddell V, Levy C, Gillece J, Price LB, Contente T, Beckstrom-Sternberg SM, Blaney DD, Wagner DM, Mayo M, Currie BJ, Keim P, Tuanyok A. 2011. Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA. PLoS Negl Trop Dis. 2011 Oct;5(10):e1347.

Foster, J. T., R.L. Bull, et al. 2011. Ricin Forensics. Microbial Forensics, 2nd Edition. B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S. A. Morse, Elsevier Press: 315-326.

Okinaka, R. T., K.K. Hill, et al. 2011. Forensic Analysis in Bacterial Pathogens. Microbial Forensics, 2nd Edition. B. Budowle, S.E. Schutzer, R.G. Breeze, P.S. Keim and S. A. Morse, Elsevier Press: 259-276.

2010

Aikembayev, A. M., L. Lukhnova, et al. 2010. Historical Distribution and Molecular Diversity of Bacillus anthracis, Kazakhstan. Emerging Infectious Diseases 16(5): 789-796.

Bowers, J. R., D. M. Engelthaler, et al. 2010. BurkDiff: a real-time PCR allelic discrimination assay for Burkholderia pseudomallei and B. mallei. PLoS One 5(11): e15413.

Brown, A. N., J. J. McSharry, et al. 2010. In vitro system for modeling influenza A virus resistance under drug pressure. Antimicrob Agents Chemother 54(8): 3442-50.

Chen, P. E., K. M. Willner, et al. 2010. Rapid identification of genetic modifications in Bacillus anthracis using whole genome draft sequences generated by 454 pyrosequencing. PLoS One 5(8): e12397.

Colman, R. E., R. J. Brinkerhoff, et al. 2010. Plague in Urban Prairie Dog Colonies. Vector-Borne and Zoonotic Diseases 10(1): 100-100.

Cummings, C. A., C. A. Bormann Chung, et al. 2010. Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing. Investig Genet 1(1): 5.

Davis, T. S., R. W. Hofstetter, et al. 2010. Interactions between the yeast Ogataea pini and filamentous fungi associated with the western pine beetle. Microb Ecol 61(3): 626-34.

Foster, J. T., G. J. Allan, et al. 2010. Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis). BMC Plant Biol 10: 13.

Friggens, M. M., R. R. Parmenter, et al. 2010. Flea abundance, diversity, and plague in Gunnison’s prairie dogs (Cynomys gunnisoni) and their burrows in montane grasslands in northern New Mexico. J Wildl Dis 46(2): 356-67.

Greenberg, D. L., J. D. Busch, et al. 2010. Identifying experimental surrogates for Bacillus anthracis spores: a review. Investig Genet 1(1): 4.

Johansson, A., J. Celli, et al. 2010. Objections to the transfer of Francisella novicida to the subspecies rank of Francisella tularensis. Int J Syst Evol Microbiol 60(Pt 8): 1717-8; author reply 1718-20.

Losada, L., C. M. Ronning, et al. 2010. Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biol Evol 2: 102-16.

Morelli, G., Y. Song, et al. 2010. Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity. Nat Genet 42(12): 1140-3.

Nandi, T., C. Ong, et al. 2010. A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence. Plos Pathogens 6(4): -.

Price, E. P., H. M. Hornstra, et al. 2010. Within-Host Evolution of Burkholderia pseudomallei in Four Cases of Acute Melioidosis. Plos Pathogens 6(1): -.

Price, E. P., M. A. Matthews, et al. 2010. Cost-effective interrogation of single nucleotide polymorphisms using the mismatch amplification mutation assay and capillary electrophoresis. Electrophoresis 31(23-24): 3881-3888.

Price, L. B., C. M. Liu, et al. 2010. Macroscale spatial variation in chronic wound microbiota: A cross-sectional study. Wound Repair Regen.

Price, L. B., C. M. Liu, et al. 2010. The effects of circumcision on the penis microbiome. PLoS One 5(1): e8422.

Reutter, D., S. E. Schutzer, et al. 2010. Planning for exercises of chemical, biological, radiological, and nuclear (CBRN) forensic capabilities. Biosecur Bioterror 8(4): 343-55.

Sarovich, D. S., R. E. Colman, et al. 2010. Selective isolation of Yersinia pestis from plague-infected fleas. Journal of Microbiological Methods 82(1): 95-97.

Sheff, K. W., E. R. York, et al. 2010. Development of a rapid, cost-effective TaqMan Real-Time PCR Assay for identification and differentiation of Coccidioides immitis and Coccidioides posadasii. Med Mycol 48(3): 466-9.

Wagner, D. M., J. Runberg, et al. 2010. No Resistance Plasmid in Yersinia pestis, North America. Emerging Infectious Diseases 16(5): 885-887.

Wagner, D. M., A. Vogler, et al. 2010. Population Structure and Evolutionary History of Yersinia Pestis in North America. Vector-Borne and Zoonotic Diseases 10(1): 99-99.

Nandi, T., C. Ong, et al. 2010. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PLoS Pathog 6(4): e1000845.

Price, E. P., H. M. Hornstra, et al. 2010. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog 6(1): e1000725.

Reutter, D., S. E. Schutzer, et al. 2010. Planning for exercises of chemical, biological, radiological, and nuclear (CBRN) forensic capabilities. Biosecur Bioterror 8(4): 343-55.

Kenefic, Leo J., Richard T. Okinaka and Paul Keim. 2010. Population Genetics of Bacillus: Phylogeography of Anthrax in North America. In “Bacterial Population Genetics in Infectious Disease” eds. D. Ashley Robinson, Daniel Falush, Edward J. Feil. Wiley-Blackwell. in press 6/9.

Keim, P., Victor Waddell David M. Engelthaler. 2010. Detection of Agents Associated with Bioterrorism. In “Molecular Microbiology: Diagnostic Principles and Practice,” 2nd Edition David Persing, Fred Tenover, Randall Hayden, Frederick Nolte, Yi-Wei Tang, and Alex Van Belkum, Eds. ASM Press. Chapter 33 – pp 525-534Invited.

Foster, JT., RL Bull, and P Keim. 2010. Ricin Forensics: Comparisons to Microbial Forensics. Chapter 19. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p. 315-26.

Kaufmann, AF, and Paul S. Keim. 2010. The Kameido anthrax incident: a microbial forensics case study. Chapter 1. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p. 5-14.

Keim, Paul, Bruce Budowle and Jacques Ravel. 2010. Microbial Forensic Investigation of the Anthrax-Letter Attacks. Chapter 2. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p. 15-28.

Keim, Paul, Talima Pearson, Mark Wilson, David Wagner. 2010. Microbial Forensic Investigations in the Context of Bacterial Population Genetics. Chapter 32. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p.545-61.

Okinaka, Richard T., Karen H. Hill, Talima Pearson, Jeffrey T. Foster, Amy J. Vogler, Apichai Tuanyok, David M. Wagner, Paul Keim. 2010. Forensic Analysis in Bacterial Pathogens. Chapter 16. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p.259-77.

Schutzer, Steven, Bruce Budowle, Roger Breeze, Paul S. Keim, Stephen A. Morse. 2010. Introduction – The Rapidly Evolving Discipline of Microbial Forensics. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p.XIX.

Keim, Paul, Stephen Morse, Steven Schutzer, Roger Breeze, Bruce Budowle. 2010. Conclusion -Microbial Forensics, What Next? Chapter 41. In: Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p.997-81.

Schutzer, Steven, Bruce Budowle, Paul S. Keim. 2010. Microbial Forensics: Educating the Workforce and the Community. Chapter 39. In Microbial Forensics, 2nd Edition. Editors B. Budowle, S.E. Schutzer, R.G. Breeze, P. S. Keim, and S.A. Morse. Elsevier. p.997-81.

Vogler, Amy; Birdsell, Dawn; Lee, Judy; Vaissaire, Josï¿½e; Le Doujet, Claudine; Lapalus, Martine; Wagner, David; Keim, Paul. 2010. Phylogeography of Francisella tularensis subsp. holarctica in France. Letters in Applied Microbiology, 2:177-80. doi: 10.1111/j.1472-765X.2010.02977.x.

Keim, P., Victor Waddell, David M. Engelthaler. 2010. Detection of Agents Associated with Bioterrorism. In “Molecular Microbiology: Diagnostic Principles and Practice,” 2nd Edition David Persing, Fred Tenover, Randall Hayden, Frederick Nolte, Yi-Wei Tang, and Alex Van Belkum, Eds. ASM Press. Chapter 33 – pp 525-534.

2009

Schutzer S. E., Keim P., Czerwinski K., Budowle B. 2009. Use of forensic methods under exigent circumstances without full validation. Sci Transl Med. 1(8):8cm7.

Ravel J., Jiang L., Stanley S. T., Wilson M. R., Decker R. S., Read T. D., Worsham P., Keim P. S., Salzberg S. L., Fraser-Liggett C. M., Rasko D. A. 2009. The complete genome sequence of Bacillus anthracis Ames “Ancestor”. J Bacteriol. 191(1):445-6.

Price L. B., Liu C. M., Melendez J. H., Frankel Y. M., Engelthaler D., Aziz M ., Bowers J., Rattray R., Ravel J., Kingsley C., Keim P. S., Lazarus G. S., Zenilman J. M. 2009. Community analysis of chronic wound bacteria using 16S rRNA gene-based pyrosequencing: impact of diabetes and antibiotics on chronic wound microbiota. PLoS One. 4(7):e6462.

Pearson T., Okinaka R. T., Foster J. T., Keim P. 2009. Phylogenetic understanding of clonal populations in an era of whole genome sequencing. Infect Genet Evol. 9(5):1010-9.

Pearson T., Giffard P., Beckstrom-Sternberg S., Auerbach R., Hornstra H., Tuanyok A., Price E. P., Glass M. B., Leadem B., Beckstrom-Sternberg J. S., Allan G. J., Foster J. T., Wagner D. M., Okinaka R. T., Sim S. H., Pearson O., Wu Z., Chang J., Kaul R., Hoffmaster A. R., Brettin T. S., Robison R. A., Mayo M., Gee J. E., Tan P., Currie B. J., Keim P. 2009. Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer. BMC Biol. 18:7-78.

Nguyen J. T., Hoopes J. D., Smee D. F., Prichard M. N., Driebe E. M., Engelthaler D. M., Le M. H., Keim P. S., Spence R. P., Went G. T. 2009. Triple combination of oseltamivir, amantadine, and ribavirin displays synergistic activity against multiple influenza virus strains in vitro. Antimicrob Agents Chemother. 53(10):4115-26.

Larsson P., Elfsmark D., Svensson K., Wikstrï¿½m P., Forsman M., Brettin T., Keim P., Johansson A. 2009. Molecular evolutionary consequences of niche restriction in Francisella tularensis, a facultative intracellular pathogen. PLoS Pathog. 5(6):e1000472.

Kenefic L. J., Pearson T., Okinaka R. T., Schupp J. M., Wagner D. M., Hoffmaster A. R., Trim C. B., Chung W. K., Beaudry J. A., Jiang L., Gajer P., Foster J. T., Mead J. I., Ravel J., Keim P. 2009. Pre-Columbian origins for North American anthrax. PLoS One. 4(3):e4813.

Keim P. S., Wagner D. M. 2009. Humans and evolutionary and ecological forces shaped the phylogeography of recently emerged diseases. Nat Rev Microbiol. 7(11):813-21.

Keim P., Gruendike J. M., Klevytska A. M., Schupp J. M., Challacombe J., Okinaka R. 2009. The genome and variation of Bacillus anthracis. Mol Aspects Med. 30(6):396-405.

Keim P. 2009. Biosecurity. Paul Keim on his life with the FBI during the anthrax investigation. Interview by Yudhijit Bhattacharjee. Science. 323(5920):1416.

Hornstra H., Pearson T., Georgia S., Liguori A., Dale J., Price E., O’Neill M., Deshazer D., Muhammad G., Saqib M., Naureen A., Keim P. 2009. Molecular epidemiology of glanders, Pakistan. Emerg Infect Dis. 15(12):2036-9.

D. R. Franz, S. A. Ehrlich, A. Casadevall, M. J. Imperiale, P. S. Keim. 2009. The “Nuclearization” of Biology Is a Threat to Health and Security. Biosecur Bioterror. 7(3):243-4.

J. T. Foster, S. M. Beckstrom-Sternberg, T. Pearson, J. S. Beckstrom-Sternberg, P. S. G. Chain, F. F. Roberto, J. Hnath, T. Brettin, and P. Keim. 2009. Whole-genome-based phylogeny and divergence of the genus Brucella. J Bacteriol. 191(8):2864-2870.

Birdsell, D. N., T. Stewart, et al. 2009. Francisella tularensis subsp. novicida isolated from a human in Arizona. BMC Res Notes 2: 223.

Busch, J. D., R. Benford, et al. 2009. Development of polymorphic tetranucleotide microsatellites for pinyon jays (Gymnorhinus cyanocephalus). Conservation Genetics 10(3): 689-691.

Champion, M. D., Q. Zeng, et al. 2009. Comparative genomic characterization of Francisella tularensis strains belonging to low and high virulence subspecies. PLoS Pathog 5(5): e1000459.

Colman, R. E., A. J. Vogler, et al. 2009. Fine-scale identification of the most likely source of a human plague infection. Emerg Infect Dis 15(10): 1623-5.

Ebert, F., P. Dillmann, et al. 2009. The experimental realization of a two-dimensional colloidal model system. Rev Sci Instrum 80(8): 083902.

Ebert, F., G. Maret, et al. 2009. Partial clustering prevents global crystallization in a binary 2D colloidal glass former. Eur Phys J E Soft Matter 29(3): 311-8.

Liu, C. M., E. M. Driebe, et al. 2009. Rapid quantification of single-nucleotide mutations in mixed influenza A viral populations using allele-specific mixture analysis. J Virol Methods 163(1): 109-15.

Simonson, T. S., R. T. Okinaka, et al. 2009. Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiol 9: 71.

Tiller, R. V., B. K. De, et al. 2009. Comparison of two multiple-locus variable-number tandem-repeat analysis methods for molecular strain typing of human Brucella melitensis isolates from the Middle East. J Clin Microbiol 47(7): 2226-31.

Trunck, L. A., K. L. Propst, et al. 2009. Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomallei clinical isolates from Thailand. PLoS Negl Trop Dis 3(9): e519.

2008

Woolbright, S. A., S. P. Difazio, T. Yin, G. D. Martinsen, X. Zhang, G. J. Allan, T. G. Whitham, and P. Keim. 2008. A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree. Heredity 100:59-70.

Vogler, A. J., E. M. Driebe, J. Lee, R. K. Auerbach, C. J. Allender, M. Stanley, K. Kubota, G. L. Andersen, L. Radnedge, P. L. Worsham, P. Keim, and D. M. Wagner. 2008. Assays for the rapid and specific identification of North American Yersinia pestis and the common laboratory strain CO92. Biotechniques 44:201, 203-4, 207.

Sinclair, R., S. A. Boone, D. Greenberg, P. Keim, and C. P. Gerba. 2008. Persistence of category A select agents in the environment. Appl Environ Microbiol 74:555-63.

Okinaka, R. T., M. Henrie, K. K. Hill, K. S. Lowery, M. Van Ert, T. Pearson, J. Schupp, L. Kenefic, J. Beaudry, S. A. Hofstadler, P. J. Jackson, and P. Keim. 2008. Single nucleotide polymorphism typing of Bacillus anthracis from Sverdlovsk tissue. Emerg Infect Dis 14:653-6.

Kenefic, L. J., T. Pearson, R. T. Okinaka, W. K. Chung, T. Max, M. N. Van Ert, C. K. Marston, K. Gutierrez, A. K. Swinford, A. R. Hoffmaster, and P. Keim. 2008. Texas isolates closely related to Bacillus anthracis Ames. Emerg Infect Dis 14:1494-6.

Kenefic, L. J., J. Beaudry, C. Trim, L. Huynh, S. Zanecki, M. Matthews, J. Schupp, M. Van Ert, and P. Keim. 2008. A high resolution four-locus multiplex single nucleotide repeat (SNR) genotyping system in Bacillus anthracis. J Microbiol Methods 73:269-72.

Kenefic, L. J., J. Beaudry, C. Trim, R. Daly, R. Parmar, S. Zanecki, L. Huynh, M. N. Van Ert, D. M. Wagner, T. Graham, and P. Keim. 2008. High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. Lett Appl Microbiol 46:600-3.

Keim, P., T. Pearson, and R. Okinaka. 2008. Microbial forensics: DNA fingerprinting of Bacillus anthracis (anthrax). Anal Chem 80:4791-9.

Huynh, L. Y., M. N. Van Ert, T. Hadfield, W. S. Probert, B. H. Bellaire, M. Dobson, R. J. Burgess, R. S. Weyant, T. Popovic, S. Zanecki, D. M. Wagner, and P. Keim. 2008. Multiple locus variable number tandem repeat (VNTR) analysis (MLVA) of Brucella spp. identifies species-specific markers and provides insights into phylogenetic relationships. In V. St. Georgiev (ed.), National Institute of Allergy and Infectious Disease, NIH: Frontiers in Research. Humana Press, Totowa, New Jersey.

Foster, J. T., R. T. Okinaka, R. Svensson, K. Shaw, B. K. De, R. A. Robison, W. S. Probert, L. J. Kenefic, W. D. Brown, and P. Keim. 2008. Real-time PCR assays of single-nucleotide polymorphisms defining the major Brucella clades. J Clin Microbiol 46:296-301.

Allender, C. J., K. M. Clancy, T. E. Degomez, J. D. McMillin, S. A. Woolbright, P. Keim, and D. M. Wagner. 2008. Lack of genetic differentiation in aggressive and secondary bark beetles (Coleoptera: Curculionidae, Scolytinae) from Arizona. Environ Entomol 37:817-24.

Casadevall, A., S. A. Ehrlich, et al. 2008. Biodefense research: a win-win challenge. Biosecur Bioterror 6(4): 291-2.

Ebert, F., P. Keim, et al. 2008. Local crystalline order in a 2D colloidal glass former. Eur Phys J E Soft Matter 26(1-2): 161-8.

Franzrahe, K., P. Keim, et al. 2008. Nonlocal elastic compliance for soft solids: theory, simulations, and experiments. Phys Rev E Stat Nonlin Soft Matter Phys 78(2 Pt 2): 026106.

Tuanyok, A., B. R. Leadem, et al. 2008. Genomic islands from five strains of Burkholderia pseudomallei. BMC Genomics 9: 566.

Busch, Joseph D., Russell Benford, Talima Pearson, Eldon Palmer, Russell P. Balda, Paul Keim. 2008. Development of polymorphic tetranucleotide microsatellites for pinyon jays (Gymnorhinus cyanocephalus) Conservation Genetics In press.

Huynh, L. Y., M. N. Van Ert, et al. 2008. Multiple locus variable number tandem repeat (VNTR) analysis (MLVA) of Brucella spp. identifies species-specific markers and provides insights into phylogenetic relationships National Institute of Allergy and Infectious Disease, NIH: Frontiers in Research. V. St. Georgiev. Totowa, New Jersey, Humana Press: 47-54.

2007

Wimp, G. M., S. Wooley, R. K. Bangert, W. P. Young, G. D. Martinsen, P. Keim, B. Rehill, R. L. Lindroth, and T. G. Whitham. 2007. Plant genetics predicts intra-annual variation in phytochemistry and arthropod community structure. Mol Ecol 16:5057-69.

Vogler, A. J., C. E. Keys, C. Allender, I. Bailey, J. Girard, T. Pearson, K. L. Smith, D. M. Wagner, and P. Keim. 2007. Mutations, mutation rates, and evolution at the hypervariable VNTR loci of Yersinia pestis. Mutat Res 616:145-58.

Van Ert, M. N., W. R. Easterday, T. S. Simonson, J. M. U’Ren, T. Pearson, L. J. Kenefic, J. D. Busch, L. Y. Huynh, M. Dukerich, C. B. Trim, J. Beaudry, A. Welty-Bernard, T. Read, C. M. Fraser, J. Ravel, and P. Keim. 2007. Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain. J Clin Microbiol 45:47-53.

Van Ert, M. N., W. R. Easterday, L. Y. Huynh, R. T. Okinaka, M. E. Hugh-Jones, J. Ravel, S. R. Zanecki, T. Pearson, T. S. Simonson, J. M. U’Ren, S. M. Kachur, R. R. Leadem-Dougherty, S. D. Rhoton, G. Zinser, J. Farlow, P. R. Coker, K. L. Smith, B. Wang, L. J. Kenefic, C. M. Fraser-Liggett, D. M. Wagner, and P. Keim. 2007. Global genetic population structure of Bacillus anthracis. PLoS ONE 2:e461.

U’Ren, J. M., J. M. Schupp, T. Pearson, H. Hornstra, C. L. Friedman, K. L. Smith, R. R. Daugherty, S. D. Rhoton, B. Leadem, S. Georgia, M. Cardon, L. Y. Huynh, D. DeShazer, S. P. Harvey, R. Robison, D. Gal, M. J. Mayo, D. Wagner, B. J. Currie, and P. Keim. 2007. Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping. BMC Microbiol 7:23.

U’Ren, J. M., H. Hornstra, T. Pearson, J. M. Schupp, B. Leadem, S. Georgia, R. W. Sermswan, and P. Keim. 2007. Fine-scale genetic diversity among Burkholderia pseudomallei soil isolates in northeast Thailand. Appl Environ Microbiol 73:6678-81.

Tuanyok, A., R. K. Auerbach, T. S. Brettin, D. C. Bruce, A. C. Munk, J. C. Detter, T. Pearson, H. Hornstra, R. W. Sermswan, V. Wuthiekanun, S. J. Peacock, B. J. Currie, P. Keim, and D. M. Wagner. 2007. A horizontal gene transfer event defines two distinct groups within Burkholderia pseudomallei that have dissimilar geographic distributions. J Bacteriol 189:9044-9.

Touchman, J. W., D. M. Wagner, J. Hao, S. D. Mastrian, M. K. Shah, A. J. Vogler, C. J. Allender, E. A. Clark, D. S. Benitez, D. J. Youngkin, J. M. Girard, R. K. Auerbach, S. M. Beckstrom-Sternberg, and P. Keim. 2007. A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis. PLoS ONE 2:e220.

Pearson, T., J. U’Ren, J. M. Schupp, G. J. Allan, P. G. Foster, M. J. Mayo, D. Gal, J. L. Choy, R. L. Daugherty, S. M. Kachur, C. L. Friedman, B. Leadem, S. Georgia, H. Hornstra, A. J. Vogler, D. M. Wagner, P. Keim, and B. J. Currie. 2007. VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia. Infect Genet Evol 7:416-423.

Lee, K., J. W. Costerton, J. Ravel, R. K. Auerbach, D. M. Wagner, P. Keim, and J. G. Leid. 2007. Phenotypic and functional characterization of Bacillus anthracis biofilms. Microbiology 153:1693-701.

Keim, P., A. Johansson, and D. M. Wagner. 2007. Molecular epidemiology, evolution, and ecology of Francisella. Ann N Y Acad Sci 1105:30-66.

Dempsey, M. P., M. Dobson, C. Zhang, M. Zhang, C. Lion, C. B. Gutierrez-Martin, P. C. Iwen, P. D. Fey, M. E. Olson, D. Niemeyer, S. Francesconi, R. Crawford, M. Stanley, J. Rhodes, D. M. Wagner, A. J. Vogler, D. Birdsell, P. Keim, A. Johansson, S. H. Hinrichs, and A. K. Benson. 2007. Genomic deletion marking an emerging subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula. Appl Environ Microbiol 73:7465-70.

Challacombe, J. F., M. R. Altherr, G. Xie, S. S. Bhotika, N. Brown, D. Bruce, C. S. Campbell, M. L. Campbell, J. Chen, O. Chertkov, C. Cleland, M. Dimitrijevic, N. A. Doggett, J. J. Fawcett, T. Glavina, L. A. Goodwin, L. D. Green, C. S. Han, K. K. Hill, P. Hitchcock, P. J. Jackson, P. Keim, A. R. Kewalramani, J. Longmire, S. Lucas, S. Malfatti, D. Martinez, K. McMurry, L. J. Meincke, M. Misra, B. L. Moseman, M. Mundt, A. C. Munk, R. T. Okinaka, B. Parson-Quintana, L. P. Reilly, P. Richardson, D. L. Robinson, E. Saunders, R. Tapia, J. G. Tesmer, N. Thayer, L. S. Thompson, H. Tice, L. O. Ticknor, P. L. Wills, P. Gilna, and T. S. Brettin. 2007. The complete genome sequence of Bacillus thuringiensis Al Hakam. J Bacteriol 189:3680-1.

Budowle, B., J. A. Beaudry, N. G. Barnaby, A. M. Giusti, J. D. Bannan, and P. Keim. 2007. Role of law enforcement response and microbial forensics in investigation of bioterrorism. Croat Med J 48:437-49.

Beckstrom-Sternberg, S. M., R. K. Auerbach, S. Godbole, J. V. Pearson, J. S. Beckstrom-Sternberg, Z. Deng, C. Munk, K. Kubota, Y. Zhou, D. Bruce, J. Noronha, R. H. Scheuermann, A. Wang, X. Wei, J. Wang, J. Hao, D. M. Wagner, T. S. Brettin, N. Brown, P. Gilna, and P. S. Keim. 2007. Complete genomic characterization of a pathogenic A.II strain of Francisella tularensis subspecies tularensis. PLoS ONE 2:e947.

Auerbach, R. K., A. Tuanyok, W. S. Probert, L. J. Kenefic, A. J. Vogler, D. C. Bruce, C. Munk, T. S. Brettin, M. Eppinger, J. Ravel, D. M. Wagner, and P. Keim. 2007. Yersinia pestis evolution on a small timescale: comparison of whole genome sequences from North America. PLoS ONE 2:e770.

Keim, P., G. Maret, et al. 2007. Frank’s constant in the hexatic phase. Phys Rev E Stat Nonlin Soft Matter Phys 75(3 Pt 1): 031402.

Keim, Paul S., Talima Pearson and Richard T. Okinaka. 2007. Evolution of Bacillus anthracis, causative agent of anthrax. In Introduction to Evolutionary Biology of Bacterial and Fungal Pathogens. Ed. Gail H. Cassell, Fernando Baquero, Cï¿½sar Nombela, Josï¿½ A. Gutiï¿½rrez-Fuentes. Chapter 46 – pp 523-534.

Huynh, Lynn Y., Matthew N. Van Ert, Ted Hadfield, William S. Probert, Bryan H. Bellaire, Michael Dobson, Robert J. Burgess, Robbin S. Weyant, Tanja Popovic, Shaylan Zanecki, David M. Wagner and Paul Keim. 2007. 2007. Multiple Locus Variable Number Tandem Repeat (VNTR) Analysis (MLVA) of Brucella spp. identifies species specific markers and insights into phylogenetic relationships. in “National Institute of Allergy and Infectious Disease, NIH: Frontiers in Research.” editor: Vassil St. Georgiev, Humana Press.

Keim, P. 2007. A Crisis is a Terrible Thing to Waste. An invited book review: “Are We Ready? Public Health Since 9/11” Science. 318 396-397.

2006

Vogler, A. J., C. Keys, Y. Nemoto, R. E. Colman, Z. Jay, and P. Keim. 2006. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol 188:4253-63.

Okinaka, R., T. Pearson, and P. Keim. 2006. Anthrax, but not Bacillus anthracis? PLoS Pathog 2:e122.

Maho, A., A. Rossano, H. Hachler, A. Holzer, E. Schelling, J. Zinsstag, M. H. Hassane, B. S. Toguebaye, A. J. Akakpo, M. Van Ert, P. Keim, L. Kenefic, J. Frey, and V. Perreten. 2006. Antibiotic susceptibility and molecular diversity of Bacillus anthracis strains in Chad: detection of a new phylogenetic subgroup. J Clin Microbiol 44:3422-5.

LeRoy, C. J., T. G. Whitham, P. Keim, and J. C. Marks. 2006. Plant genes link forests and streams. “Ecology 87:255-61.

Keim, P., M. Mock, J. Young, and T. M. Koehler. 2006. The International Bacillus anthracis, B. cereus, and B. thuringiensis Conference, “Bacillus-ACT05”. J Bacteriol 188:3433-41.

Han, C. S., G. Xie, J. F. Challacombe, M. R. Altherr, S. S. Bhotika, N. Brown, D. Bruce, C. S. Campbell, M. L. Campbell, J. Chen, O. Chertkov, C. Cleland, M. Dimitrijevic, N. A. Doggett, J. J. Fawcett, T. Glavina, L. A. Goodwin, L. D. Green, K. K. Hill, P. Hitchcock, P. J. Jackson, P. Keim, A. R. Kewalramani, J. Longmire, S. Lucas, S. Malfatti, K. McMurry, L. J. Meincke, M. Misra, B. L. Moseman, M. Mundt, A. C. Munk, R. T. Okinaka, B. Parson-Quintana, L. P. Reilly, P. Richardson, D. L. Robinson, E. Rubin, E. Saunders, R. Tapia, J. G. Tesmer, N. Thayer, L. S. Thompson, H. Tice, L. O. Ticknor, P. L. Wills, T. S. Brettin, and P. Gilna. 2006. Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. J Bacteriol 188:3382-90.

Fischer, D. G., S. C. Hart, B. J. Rehill, R. L. Lindroth, P. Keim, and T. G. Whitham. 2006. Do high-tannin leaves require more roots? Oecologia 149:668-75.

Bangert, R. K., R. J. Turek, B. Rehill, G. M. Wimp, J. A. Schweitzer, G. J. Allan, J. K. Bailey, G. D. Martinsen, P. Keim, R. L. Lindroth, and T. G. Whitham. 2006. A genetic similarity rule determines arthropod community structure. Mol Ecol 15:1379-91.

Bangert, R. K., G. J. Allan, R. J. Turek, G. M. Wimp, N. Meneses, G. D. Martinsen, P. Keim, and T. G. Whitham. 2006. From genes to geography: a genetic similarity rule for arthropod community structure at multiple geographic scales. Mol Ecol 15:4215-28.

Pearson, T., M. J. Whitfield, et al. 2006. Polygyny and extra-pair paternity in a population of Southwestern Willow Flycatchers. Condor 108(3): 571-578.

Wagner, D. M., L. C. Drickamer, et al. 2006. Persistence of Gunnison’s prairie dog colonies in Arizona, USA. Biological Conservation 130(3): 331-339.

Franz, D., D Ashford, C Blair, G Cassell, M Hilleman, CP Howson, PB Jahrling, P Keim, J. LeDuc, M. Meselson, R Morton, F Murphy, J Silva, R Witter, R Zajtchuk. 2006. Biological Science and Biotechnology in Russia: Controlling Disease and Enhancing Security. 2006. National Research Council of the National Academies of Science. National Academy of Sciences Press, Washington DC – book 146 pages.

Fischer, Dylan, Stephen Hart, Brian Rehill, Richard Lindroth, Paul Keim, Thomas G Whitham. 2006. Do High-Tannin Leaves Require More Roots? Oecologia 149:668-675.

2005

U’Ren, J. M., M. N. Van Ert, J. M. Schupp, W. R. Easterday, T. S. Simonson, R. T. Okinaka, T. Pearson, and P. Keim. 2005. Use of a real-time PCR TaqMan assay for rapid identification and differentiation of Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol 43:5771-4.

McRae, B. H., P. Beier, L. E. Dewald, L. Y. Huynh, and P. Keim. 2005. Habitat barriers limit gene flow and illuminate historical events in a wide-ranging carnivore, the American puma. Mol Ecol 14:1965-77.

Lowell, J. L., D. M. Wagner, B. Atshabar, M. F. Antolin, A. J. Vogler, P. Keim, M. C. Chu, and K. L. Gage. 2005. Identifying sources of human exposure to plague. “J Clin Microbiol 43:650-6.

Keys, C., S. Kemper, and P. Keim. 2005. Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. J Appl Microbiol 98:928-40.

Fasanella, A., M. Van Ert, S. A. Altamura, G. Garofolo, C. Buonavoglia, G. Leori, L. Huynh, S. Zanecki, and P. Keim. 2005. Molecular diversity of Bacillus anthracis in Italy. J Clin Microbiol 43:3398-401.

Farlow, J., D. M. Wagner, M. Dukerich, M. Stanley, M. Chu, K. Kubota, J. Petersen, and P. Keim. 2005. Francisella tularensis in the United States. Emerg Infect Dis 11:1835-41.

Easterday, W. R., M. N. Van Ert, S. Zanecki, and P. Keim. 2005. Specific detection of bacillus anthracis using a TaqMan mismatch amplification mutation assay. Biotechniques 38:731-5.

Easterday, W. R., M. N. Van Ert, T. S. Simonson, D. M. Wagner, L. J. Kenefic, C. J. Allender, and P. Keim. 2005. Use of single nucleotide polymorphisms in the plcR gene for specific identification of Bacillus anthracis. J Clin Microbiol 43:1995-7.

Cheung, D. T., K. M. Kam, K. L. Hau, T. K. Au, C. K. Marston, J. E. Gee, T. Popovic, M. N. Van Ert, L. Kenefic, P. Keim, and A. R. Hoffmaster. 2005. Characterization of a Bacillus anthracis isolate causing a rare case of fatal anthrax in a 2-year-old boy from Hong Kong. J Clin Microbiol 43:1992-4.

Barns, S. M., C. C. Grow, R. T. Okinaka, P. Keim, and C. R. Kuske. 2005. Detection of diverse new Francisella-like bacteria in environmental samples. Appl Environ Microbiol 71:5494-500.

Busch, J. D., T. E. Katzner, et al. 2005. Tetranucleotide microsatellites for aquila and haliaeetus eagles. Molecular Ecology Notes 5(1): 39-41.

Eisenmann, C., U. Gasser, et al. 2005. Pair interaction of dislocations in two-dimensional crystals. Phys Rev Lett 95(18): 185502.

Froltsov, V. A., C. N. Likos, et al. 2005. Anisotropic mean-square displacements in two-dimensional colloidal crystals of tilted dipoles. Phys Rev E Stat Nonlin Soft Matter Phys 71(3 Pt 1): 031404.

Shuster, S. M., M. P. Miller, et al. 2005. The effects of controlled propagation on an endangered species: genetic differentiation and divergence in body size among native and captive populations of the Socorro Isopod (Crustacea : Flabellifera). Conservation Genetics 6(3): 355-368.

Whitham, T. G., E. Lonsdorf, et al. 2005. “All effects of a gene on the world”: Extended phenotypes, feedbacks, and multi-level selection. Ecoscience 12(1): 5-7.

Keim. P. 2005. Chapter 5: Bacterial Pathogens. In Microbial Forensics. Eds. Eds. R.G. Breeze. B. Budowle and S.E. Schutzer. Academic Press. pp. 99-107.

Lenski, RE, P Keim. 2005. Population Genetics of Bacteria in a Forensic Context. In Microbial Forensics. Eds. R.G. Breeze. B. Budowle and S.E. Schutzer. Academic Press. pp. 355-370.

2004

Vodkin, LO, A Khanna, R Shealy, SJ Clough, DO Gonzalez, R Philip, G Zabala, F Thibaud-Nissen, M Sidarous, MV Stromvik et al. 2004. Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant. BMC Genomics 5:73.

Van Ert, MN, SA Hofstadler, Y Jiang, JD Busch, DM Wagner, JJ Drader, DJ Ecker, JC Hannis, LY Huynh, JM Schupp et al. 2004. Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis. Biotechniques 37:642-644, 646, 648 passim.

Valenzuela, RK, SN Forbes, P Keim, PM Service. 2004. Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. II. Response to selection. Genetics 168:313-24.

Takahashi, H, P Keim, AF Kaufmann, C Keys, KL Smith, K Taniguchi, S Inouye, T Kurata. 2004. Bacillus anthracis incident, Kameido, Tokyo, 1993. Emerg Infect Dis 10:117-20.

Pearson, T, JD Busch, J Ravel, TD Read, SD Rhoton, JM U’Ren, TS Simonson, SM Kachur, RR Leadem, ML Cardon et al. 2004. Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing. Proc Natl Acad Sci U S A 101:13536-41.

Keim, P, MN Van Ert, T Pearson, AJ Vogler, LY Huynh, DM Wagner. 2004. Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales. Infect Genet Evol 4:205-13.

Johansson, A, J Farlow, P Larsson, M Dukerich, E Chambers, M Bystrom, J Fox, M Chu, M Forsman, A Sjostedt et al. 2004. Worldwide genetic relationships among Francisella tularensis isolates determined by multiple-locus variable-number tandem repeat analysis. J Bacteriol 186:5808-18.

Hill, KK, LO Ticknor, RT Okinaka, M Asay, H Blair, KA Bliss, M Laker, PE Pardington, AP Richardson, M Tonks et al. 2004. Fluorescent amplified fragment length polymorphism analysis of Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis isolates. Appl Environ Microbiol 70:1068-80.

Girard, JM, DM Wagner, AJ Vogler, C Keys, CJ Allender, LC Drickamer, P Keim. 2004. Differential plague-transmission dynamics determine Yersinia pestis population genetic structure on local, regional, and global scales. Proc Natl Acad Sci U S A 101:8408-13.

Forbes, SN, RK Valenzuela, P Keim, PM Service. 2004. Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. I. Composite interval mapping. Genetics 168:301-11.

Fischer, DG, SC Hart, TG Whitham, GD Martinsen, P Keim. 2004. Ecosystem implications of genetic variation in water-use of a dominant riparian tree. Oecologia 139:288-97

DeWoody, JA, J Schupp, L Kenefic, J Busch, L Murfitt, P Keim. 2004. Universal method for producing ROX-labeled size standards suitable for automated genotyping. Biotechniques 37:348, 350, 352.

Allender, CJ, WR Easterday, MN Van Ert, DM Wagner, P Keim. 2004. High-throughput extraction of arthropod vector and pathogen DNA using bead milling. Biotechniques 2004, 37:730, 732, 734.

Achtman, M, G Morelli, P Zhu, T Wirth, I Diehl, B Kusecek, AJ Vogler, DM Wagner, CJ Allender, WR Easterday et al. 2004. Microevolution and history of the plague bacillus, Yersinia pestis. Proc Natl Acad Sci U S A 101:17837-42.

Eisenmann, C., U. Gasser, et al. 2004. Anisotropic defect-mediated melting of two-dimensional colloidal crystals. Phys Rev Lett 93(10): 105702.

Keim, P., G. Maret, et al. 2004. Harmonic lattice behavior of two-dimensional colloidal crystals. Phys Rev Lett 92(21): 215504.

Schweitzer, J. A., J. K. Bailey, et al. 2004. Genetically based trait in a dominant tree affects ecosystem processes. Ecology Letters 7(2): 127-134.

von Grunberg, H. H., P. Keim, et al. 2004. Elastic behavior of a two-dimensional crystal near melting. Phys Rev Lett 93(25): 255703.

Wimp, G. M., W. P. Young, et al. 2004. Conserving plant genetic diversity for dependent animal communities. Ecology Letters 7(9): 776-780.

Vaissaire, J, A. Fouet, KL Smith, C Keys, CL Doujet, Martine Levy, Christiane Mendy, Michéle Mock Et Paul Keim. 2004. Epidémiologie du charbon bactéridien en France Diversité des souches et originalité des génotypes trouvés. In “Bulletin de l’Académie Vétérinaire de France” Académie Vétérinaire de France.

2003

Spurgiesz, RS, TN Quitugua, KL Smith, J Schupp, EG Palmer, RA Cox, P Keim. 2003. Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates. J Clin Microbiol 41:4224-30.

Radnedge, L, PG Agron, KK Hill, PJ Jackson, LO Ticknor, P Keim, GL Andersen. 2003. Genome differences that distinguish Bacillus anthracis from Bacillus cereus and Bacillus thuringiensis. Appl Environ Microbiol 69:2755-64.

Price, LB, A Vogler, T Pearson, JD Busch, JM Schupp, P Keim. 2003. In vitro selection and characterization of Bacillus anthracis mutants with high-level resistance to ciprofloxacin. Antimicrob Agents Chemother 47:2362-65.

Faure, J-E, ML Rusche, A Thomas, P Keim, C Dumas, HL Mogensen, M Rougier, A Chaboud. 2003. Double fertilization in maize: the two male gametes from a pollen grain have the ability to fuse with egg cells. The Plant Journal: For Cell and Molecular Biology 33:1051.

Reich, T. E., P. Keim, et al. 2003. Does titin contribute to the muscle spring? Faseb Journal 17(4): A423-A423.

Keim, P. 2003. Microbial Forensics: A Scientific Assessment. American Academy of Microbiology report. ASM Press.

2002

Vogler, AJ, JD Busch, S Percy-Fine, C Tipton-Hunton, KL Smith, P Keim. 2002. Molecular analysis of rifampin resistance in Bacillus anthracis and Bacillus cereus. Antimicrob Agents Chemother 46:511-13.

Shoemaker, R, P Keim, L Vodkin, E Retzel, SW Clifton, R Waterston, D Smoller, V Coryell, A Khanna, J Erpelding et al. 2002. A compilation of soybean ESTs: generation and analysis. Genome 45:329-38.

Read, TD, SL Salzberg, M Pop, M Shumway, L Umayam, L Jiang, E Holtzapple, JD Busch, KL Smith, JM Schupp et al. 2002. Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis. Science 296:2028-33.

Paxton, EH, MK Sogge, TD McCarthey, P Keim. 2002. Nestling sex ratio in the Southwestern Willow Flycatcher. Condor 104:877-81.

Mock, KE, TC Theimer, OE Rhodes, Jr., DL Greenberg, P Keim. 2002. Genetic variation across the historical range of the wild turkey (Meleagris gallopavo). Mol Ecol 11:643-57.

Miller, MP, DW Blinn, P Keim. 2002. Correlations between observed dispersal capabilities and patterns of genetic differentiation in populations of four aquatic insect species from the Arizona White Mountains, U.S.A. Freshwater Biology 47:1660-73.

Lindstedt, SL, TE Reich, P Keim, PC LaStayo. 2002. Do muscles function as adaptable locomotor springs? J Exp Biol 205(Pt 15):2211-16.

Keim, P, KL Smith. 2002. Bacillus anthracis evolution and epidemiology. Curr Top Microbiol Immunol 271:21-32.

Granger, C, V Coryell, A Khanna, P Keim, L Vodkin, RC Shoemaker. 2002. Identification, structure, and differential expression of members of a BURP domain containing protein family in soybean. Genome 45:693-701.

Fouet, A, KL Smith, C Keys, J Vaissaire, C Le Doujet, M Levy, M Mock, P Keim. 2002. Diversity among French Bacillus anthracis isolates. J Clin Microbiol 40:4732-4.

Farlow, J, D Postic, KL Smith, Z Jay, G Baranton, P Keim. 2002. Strain typing of Borrelia burgdorferi, Borrelia afzelii, and Borrelia garinii by using multiple-locus variable-number tandem repeat analysis. J Clin Microbiol 40:4612-8.

Turnbull, P., P. Jackson, K. Hill, A-B, Koltso, Keim, P. 2002. Systematic Relationships within Bacillus anthracis. “In: Applications and Systematics for Bacillus and Relatives. (Berkeley,RCW, Heyndrickx M, Logan NA, de Vos P, eds). Blackwell Science, Oxford”.

2001

Young, WP, CO Ostberg, P Keim, GH Thorgaard. 2001. Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Mol Ecol 10:921-30.

Ticknor, LO, AB Kolsto, KK Hill, P Keim, MT Laker, M Tonks, PJ Jackson. 2001. Fluorescent Amplified Fragment Length Polymorphism Analysis of Norwegian Bacillus cereus and Bacillus thuringiensis Soil Isolates. Appl Environ Microbiol 67:4863-73.

Shuster, SM, G Zinser, P Keim, JWO Ballard, C Sassaman. 2001. The influence of genetic and extrachromosomal factors on population sex ratio in the marine isopod, Paracerceis sculpta. Journal of Crustacean Biology 313-26

Mock, KE, TC Theimer, BF Wakeling, OE Rhodes, Jr., DL Greenberg, P Keim. 2001. Verifying the origins of a reintroduced population of Gould’s wild turkey. Journal of Wildlife Management 65:871-9.

Martinsen, GD, TG Whitham, RJ Turek, P Keim. 2001. Hybrid populations selectively filter gene introgression between species. Evolution 55:1325-35.

Klevytska, AM, LB Price, JM Schupp, PL Worsham, J Wong, P Keim. 2001. Identification and characterization of variable-number tandem repeats in the Yersinia pestis genome. J Clin Microbiol 39:3179-85.

Keim, P, KL Smith, C Keys, H Takahashi, T Kurata, A Kaufmann. 2001. Molecular investigation of the Aum Shinrikyo anthrax release in Kameido, Japan. J Clin Microbiol 39:4566-7.

Farlow, J, KL Smith, J Wong, M Abrams, M Lytle, P Keim. 2001. Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. J Clin Microbiol 39:3186-92.

Rusche, M. L., H. L. Mogensen, et al. 2001. B chromosomes of maize (Zea mays L.) are positioned nonrandomly within sperm nuclei. Sexual Plant Reproduction 13(4): 231-234.

Mock, K. E., T. C. Theimer, D. L. Greenberg, P. Keim. 2001. Conservation of genetic diversity within and among subspecies of wild turkey. Pages 35-42 in W. F. Porter and K. K. Fleming, eds., Making Tracks 2000: the Eighth National Wild Turkey Symposium. National Wild Turkey Federation, Edgefield, SC, USA.

Bradley, K, M Grubbs, M Lytle, M Crutcher, K Smith, P Keim. 2001. Tularemia – Oklahoma, 2000. MMWR 50:704-6.

2000

Smith, KL, V DeVos, H Bryden, LB Price, ME Hugh-Jones, P Keim. 2000. Bacillus anthracis diversity in Kruger National Park. J Clin Microbiol 38:3780-4.

Schupp, JM, AM Klevytska, G Zinser, LB Price, P Keim. 2000. vrrB, a hypervariable open reading frame in Bacillus anthracis. J Bacteriol 182:3989-97.

Miller, MP, LE Stevens, JD Busch, JA Sorensen, P Keim. 2000. Amplified fragment length polymorphism and mitochondrial sequence data detect genetic differentiation and relationships in endangered southwestern U.S.A. ambersnails (Oxyloma spp.). Canadian Journal of Zoology 78:1845-54.

Keim, P, LB Price, AM Klevystska, KL Smith, JM Schupp, R Okinaka, PJ Jackson, ME Hugh-Jones. 2000. Multiple-Locus Variable-Number Tandem Repeat Analysis reveals genetic relationships within Bacillus anthracis. J Bacteriol 182:2928-36.

Ferreira, AR, KR Foutz, P Keim. 2000. Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map. J Hered 91:392-6.

Busch, JD, MP Miller, EH Paxton, MK Sogge, P Keim. 2000. Genetic variation in the endangered southwestern willow flycatcher. Auk 117:586-95.

Adair, DM, PL Worsham, KK Hill, AM Klevytska, PJ Jackson, AM Friedlander, P Keim. 2000. Diversity in a variable-number tandem repeat from Yersinia pestis. J Clin Microbiol 38:1516-9.

1999

Whitham, TG, GD Martinsen, KD Floate, HS Dungey, BM Potts, P Keim. 1999. Plant hybrid zones affect biodiversity: tools for a genetic-based understanding of community structure. Ecology 80:416-28.

Smith, KL, V De Vos, HB Bryden, ME Hugh-Jones, A Klevytska, LB Price, P Keim, DT Scholl. 1999. Meso-scale ecology of anthrax in southern Africa: a pilot study of diversity and clustering. J Appl Microbiol 87:204-7.

Schupp, JM, LB Price, A Klevytska, P Keim. 1999. Internal and flanking sequence from AFLP fragments using ligation-mediated suppression PCR. Biotechniques 26:905-910, 912.

Price, LB, M Hugh-Jones, PJ Jackson, P Keim. 1999. Genetic diversity in the protective antigen gene of Bacillus anthracis. J Bacteriol 181:2358-62.

Okinaka, RT, K Cloud, O Hampton, AR Hoffmaster, KK Hill, P Keim, TM Koehler, G Lamke, S Kumano, J Mahillon et al. 1999. Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes. J Bacteriol 181:6509-15.

Okinaka, R, K Cloud, O Hampton, A Hoffmaster, K Hill, P Keim, T Koehler, G Lamke, S Kumano, D Manter et al. 1999. Sequence, assembly and analysis of pX01 and pX02. J Appl Microbiol 87:261-2.

Okinaka, R, K Cloud, O Hampton, A Hoffmaster, K Hill, P Keim, T Koehler, G Lamke, S Kumano, et al. 1999. Sequence, assembly and analysis of pX01 and pX02. Journal of Applied Microbiology 87:2612.

Miller, MP, DN Kimberling, P Keim. 1999. Re-analysis of genetic structure among populations of Rana pipiens in Arizona and Utah. Southwestern Naturalist 44:527-30.

Keim, P, AM Klevytska, LB Price, JM Schupp, G Zinser, KL Smith, ME Hugh-Jones, R Okinaka, KK Hill, PJ Jackson. 1999. Molecular diversity in Bacillus anthracis. J Appl Microbiol 87:215-7.

Jackson, PJ, KK Hill, MT Laker, LO Ticknor, P Keim. 1999. Genetic comparison of Bacillus anthracis and its close relatives using amplified fragment length polymorphism and polymerase chain reaction analysis. J Appl Microbiol 87:263-9.

Govedich, FR, DW Blinn, RH Hevly, PS Keim. 1999. Cryptic radiation in erpobdellid leeches in xeric landscapes: a molecular analysis of population differentiation. Canadian Journal of Zoology 77:52-7.

1998

Young, WP, PA Wheeler, VH Coryell, P Keim, GH Thorgaard. 1998. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148:839-50.

Willardson, BM, JF Wilkins, TA Rand, JM Schupp, KK Hill, P Keim, PJ Jackson. 1998. Development and testing of a bacterial biosensor for toluene-based environmental contaminants. Appl Environ Microbiol 64:1006-12.

Thomas, EP, DW Blinn, P Keim. 1998. Do xeric landscapes increase genetic divergence in aquatic ecosystems? Freshwater Biology 40:587-93.

Theimer, TC, P Keim. 1998. Phylogenetic relationships of peccaries based on mitochondrial cytochrome b DNA sequences. Journal of Mammalogy 79:566-72.

Jackson, PJ, ME Hugh-Jones, DM Adair, G Green, KK Hill, CR Kuske, LM Grinberg, FA Abramova, P Keim. 1998. PCR analysis of tissue samples from the 1979 Sverdlovsk anthrax victims: the presence of multiple Bacillus anthracis strains in different victims. Proc Natl Acad Sci U S A 95:1224-9.

Govedich, FR, DW Blinn, P Keim, RW Davies. 1998. Phylogenetic relationships of three genera of Erpobdellidae (Hirudinoidea), with a description of a new genus, Motobdella, and species, Motobdella sedonensis. Canadian Journal of Zoology 76:2164-71

erreira, AR, P. Keim. 1998. Genetic Mapping of Soybean [Glycine max (L.) Merr.] Using Random Amplified Polymorphic DNA (RAPD). Plant Molecular Biology Reporter. 15:335-354.

1997

Travis, SE, CN Slobodchikoff, P Keim. 1997. DNA fingerprinting reveals low genetic diversity in Gunnison’s prairie dog (Cynomys gunnisoni). Journal of Mammalogy 78:725-32.

Thomas, PE, DW Blinn, P Keim. 1997. Genetic and behavioural divergence among desert spring amphipod populations. Freshwater Biology 38:137-43.

Rusche, ML, HL Mogensen, L Shi, P Keim, M Rougier, A Chaboud, C Dumas. 1997. B chromosome behavior in maize pollen as determined by a molecular probe. Genetics 147:1915-21.

Morgante, M, I Jurman, L Shi, T Zhu, P Keim, JA Rafalski. 1997. The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity. Chromosome Res 5:363-73.

Keim, P, A Kalif, J Schupp, K Hill, SE Travis, K Richmond, DM Adair, M Hugh-Jones, CR Kuske, P Jackson. 1997. Molecular evolution and diversity in Bacillus anthracis as detected by amplified fragment length polymorphism markers. J Bacteriol 179:818-824.

Keim, P, K Abdulahi, J Schupp, K Hill, SE Travis, K Richmond, DM Adair, M Hugh-Jones, CR Kuske, P Jackson. 1997. Molecular evolution and Diversity in Bacillus anthracis as detected by amplified fragment length pollymorphism. J Bacteriol 179:818-24.

Jackson, PJ, EA Walthers, KS Abdullahi, KL Richmond, DM Adair, KK Hill, CR Kuske, GL Andersen, KH Wilson, ME Hugh-Jones et al. 1997. Characterization of the variable-number tandem repeats in vrrA from different Bacillus anthracis isolates. App Env Microbiol 63:1400-5.

1996

Zhu, T, I Shi, RP Funke, PM Gresshoff, P Keim. 1996. Characterization and application of soybean YACs to molecular cytogenetics. Mol Gen Genet 252:483-8.

Travis, SE, CN Slobodchikoff, P Keim. 1996. Social assemblages and mating relationships in prairie dogs: a DNA fingerprint analysis. Behavioral Ecology 7:95-100.

Travis, SE, J Maschinski, P Keim. 1996. An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critically endangered plant, using AFLP markers. Mol Ecol 5:735-45.

Shi, L, T Zhu, M Morgante, JA Rafalski, P Keim. 1996. Soybean chromosome painting: a strategy for somatic cytogenetics. J Hered 87:308-13.

Shi, L, T Zhu, HL Mogensen, P Keim. 1996. Sperm Identification in Maize by Fluorescence in Situ Hybridization. Plant Cell 8:815-21

Kimberling, DN, AR Ferreira, SM Shuster, P Keim. 1996. RAPD marker estimation of genetic structure among isolated northern leopard frog populations in the south-western USA. Mol Ecol 5:521-9.

Danna, KJ, R Workman, V Coryell, P Keim 1996. 5S rRNA genes in tribe Phaseoleae: array size, number, and dynamics. Genome 39:445-55.

Shi, L., T. Zhu, et al. 1996. Ribosomal RNA genes in soybean and common bean: Chromosomal organization, expression, and evolution. Theoretical and Applied Genetics 93(1-2): 136-141.

Beavis, W.D., P. Keim. 1996. Identification of QTL that are affected by environment. In: Genotype-By-Environment Interaction and Plant Breeding. editors M.S. Kang and H.G. Gaush, Jr. CRC Press. pp 123-149.

Keim, P., AR Ferreira, L Shi, T Zhu, JM Schupp. 1996. Molecular Genetic Analysis and Soybean Improvement. Marcades Moleculares. EMBRAPA Press. eds. M. Ferreira and D. Grattapaglia. Brasilia Brasil.

Whitham, T.G, K.D. Floate, G.D. Martinsen, E.M. Driebe, P. Keim. 1996. Ecological and evolutionary implications of hybridization: Populus-herbivore interactions. In Biology of Populus and its Implications for Management and Conservation (R.F. Stettler, H.D. Bradshaw, Jr., P.E. Heilman and T. M. Hinckley, eds.). NRC Research Press. 247-276.

1995

Vahedian, M, L Shi, T Zhu, R Okimoto, K Danna, P Keim. 1995. Genomic organization and evolution of the soybean SB92 satellite sequence. Plant Mol Biol 29:857-62.

Travis, SE, CN Slobodchikoff, P Keim. 1995. Ecological and demographic effects on intraspecific variation in the social system of prairie dogs. Ecology 76:1794-803.

Travis, SE, P Keim. 1995. Differentiating individuals and populations of mule deer using DNA. Journal of Wildlife Management 59:824-31.

Schupp, JM, SE Travis, LB Price, RF Shand, P Keim. 1995. Rapid bacterial permeabilization reagent useful for enzyme assays. Biotechniques 19:18-20.

Christensen, KM, TG Whitham, P Keim. 1995. Herbivory and tree mortality across a pinyon pine hybrid zone. Oecologia 101:29-36

Webb, D. M., B. M. Baltazar, et al. 1995. Genetic-Mapping of Soybean Cyst-Nematode Race-3 Resistance Loci in the Soybean Pi-437.654. Theoretical and Applied Genetics 91(4): 574-581.

Zhu, T., L. Shi, et al. 1995. A Single Nuclear Locus Phylogeny of Soybean Based on DNA-Sequence. Theoretical and Applied Genetics 90(7-8): 991-999.

Travis, S. E., C. N. Slobodchikoff, et al. 1995. Ecological and Demographic Effects on Intraspecific Variation in the Social System of Prairie Dogs. Ecology 76(6): 1794-1803.

1994

Zhu, T, JM Schupp, A Oliphant, P Keim. 1994. Hypomethylated sequences: characterization of the duplicate soybean genome. Mol Gen Genet 244:638-45.

Thomas, EP, DW Blinn, P Keim. 1994. A test of an allopatric speciation model for congeneric amphipods in an isolated aquatic ecosystem. Journal of the North American Benthological Society 1994, 13:100-9.

Theimer, TC, P Keim. 1994. Geographic patterns of mitochondrial-DNA variation in collared peccaries. Journal of Mammalogy 75:121-8.

Floate, K. D., T. G. Whitham, et al. 1994. Morphological Versus Genetic-Markers in Classifying Hybrid Plants. Evolution 48(3): 929-930.

Sobral, B. W. S., D. P. V. Braga, et al. 1994. Phylogenetic Analysis of Chloroplast Restriction Enzyme Site Mutations in the Saccharinae Griseb Subtribe of the Andropogoneae Dumort Tribe. Theoretical and Applied Genetics 87(7): 843-853.

1992

Blackett, RS, P Keim. 1992. Big game species identification by deoxyribonucleic acid (DNA) probes. J Forensic Sci 37:590-6.

Diers, B. W., P. Keim, et al. 1992. Rflp Analysis of Soybean Seed Protein and Oil Content. Theoretical and Applied Genetics 83(5): 608-612.

Keim, P., W. Beavis, et al. 1992. Evaluation of Soybean Rflp Marker Diversity in Adapted Germ Plasm. Theoretical and Applied Genetics 85(2-3): 205-212.

Honeycutt, RJ, BWS Sobral, P Keim, JE Irvine. 1992. A Rapid DNA Extraction Method for Sugarcane and its Relatives. Plant Molecular Biology Reporter 10:66-68.

1991

Muehlbauer, G. J., P. E. Staswick, et al. 1991. Rflp Mapping Using near-Isogenic Lines in the Soybean [Glycine-Max (L) Merr]. Theoretical and Applied Genetics 81(2): 189-198.

1990

Keim, P, KG Lark. 1990. The RecE recombination pathway mediates recombination between partially homologous DNA sequences: structural analysis of recombination products. J Struct Biol 104:97-106.

Keim, P, BW Diers, TC Olson, RC Shoemaker. 1990. RFLP mapping in soybean: association between marker loci and variation in quantitative traits. Genetics 126:735-42.

Paige, K, P Keim, T Whitham, KG Lark. 1990. The Use of Restriction Fragment Length Polymorphisms to Study the Ecology and Evolutionary Biology of Aphid-Plant Interactions. in “Aphid-Plant Genotype Interactions” RK Campbell & RD Eikenbary eds. pp. 69-87.

Theimer, TC, R Blackett, P Keim. 1990. Molecular Genetics and Big Game Management. “Managing Wildlife in the Southwest” Symposium Proceedings. eds. P.R. Krausman and N.S. Smith. Arizona Chapter of The Wildlife Society Publication. p. 1-25.

1989

Keim, P, KN Paige, TG Whitham, KG Lark. 1989. Genetic analysis of an interspecific hybrid swarm of Populus: occurrence of unidirectional introgression. Genetics 123:557-65.

Close, P. S., R. C. Shoemaker, et al. 1989. Distribution of Restriction Site Polymorphism within the Chloroplast Genome of the Genus Glycine, Subgenus Soja. Theoretical and Applied Genetics 77(6): 768-776.

Keim, P., R. C. Shoemaker, et al. 1989. Restriction Fragment Length Polymorphism Diversity in Soybean. Theoretical and Applied Genetics 77(6): 786-792.

Keim, P, BW Diers, RG Palmer, RC Shoemaker. 1989. Qualitative and Quantitative Studies of Soybean with RFLP Markers. in “Proceeding of the Banbury Conference on Molecular Markers in Plants”. (eds) Burr, Helentjaris Cold Spring Harbor Press, Cold Spring Harbor NY, pages 35-39.

1988

Apuya, N. R., B. L. Frazier, et al. 1988. “Restriction Fragment Length Polymorphisms as Genetic-Markers in Soybean, Glycine-Max (L) Merrill.” Theoretical and Applied Genetics 75(6): 889-901.

1987

Keim, P, KG Lark. 1987. The sequence of the 3.3-kilobase repetitive element from Dipodomys ordii suggests a mechanism for its amplification and interspersion. J Mol Evol 25:65-73.

Keim, P. 1987. Isolation of nuclei from soybean suspension cultures. Methods Enzymol 148:535-541.

Keim, P., E. J. Roth, et al. 1987. Low Homology Recombination by Rec-E and Red Recombination in Lambda-Phage and Plasmids. Federation Proceedings 46(6): 2210-2210.

Keim, P. 1987. An Interaction Between Mitochondria and the Nucleus During Mitochondrial DNA Replication. in “Models in Plant Physiology”. eds. D Newman and K Wilson. CRC Press.

1985

Terzaghi, W, EJ Roth, P Keim, RJ Honeycutt, KG Lark. 1985. A Somatic Genetics System for Soybean. in “Plant Genetics” UCLA Symposia on Molecular and Cellular Biology, New Series. ed. M Freeling. 35:771-789.

1984

Keim, P, AT Thliveris, EA Meenen, KG Lark. 1984. Rearrangements of a Immunoglobin-Like Sequence Mediated by a Specific Prokaryotic Recombination System. in “Regulation of the Immune System”. UCLA symposium on Molecular and Cellular Biology, New Series. eds. H Cantor, L Chess, and E Sercarz. 18:511-526.

1981

Keim, PS, JL Erion, JE Fox 1981. Current Status of Cytokinin Binding Moieties, in “Metabolism and Molecular Activities of Cytokinins”. eds. J Guern and C Pead-Lenol. Springer Verlag pp 179-186.

1980

Keim, P, Fox, JE. 1980. Interaction of a radiolabeled cytokinin photoaffinity probe with a receptor protein. Biochem Biophys Res Commun. 1980 Oct 16;96(3):1325-34.