{"id":1749,"date":"2020-04-07T11:56:48","date_gmt":"2020-04-07T18:56:48","guid":{"rendered":"https:\/\/in.nau.edu\/hpc\/?page_id=1749"},"modified":"2024-08-13T15:03:06","modified_gmt":"2024-08-13T22:03:06","slug":"rgdal-install","status":"publish","type":"page","link":"https:\/\/in.nau.edu\/arc\/rgdal-install\/","title":{"rendered":"Rgdal Install"},"content":{"rendered":"

Installing Rgdal
\n<\/span><\/h1>\n
\n

What follows are instructions to install rgdal<\/span> for use within R<\/span> 3.6.3, and gdal<\/span> 3.0.4. The following commands will need to be run on one of our login nodes wind<\/span> or rain<\/span>.<\/p>\n

In order to install rgdal<\/span>:<\/p>\n

    \n
  1. \n
      \n
    1. Load the R<\/span>, proj<\/span>, and gdal<\/span> modules required for rgdal.
      \n[abc123@wind ~]$ module load R\/3.6.3 proj\/6.1.0 gdal\/3.0.4<\/code><\/li>\n
    2. Export the PKG_CONFIG_PATH<\/span> environment variable.
      \n[abc123@wind ~]$ export PKG_CONFIG_PATH=\/packages\/PROJ\/6.1.0\/lib\/pkgconfig<\/code><\/li>\n
    3. Start R<\/span>.
      \n[abc123@wind ~]$ R<\/code><\/li>\n
    4. Install the rgdal<\/span> package.
      \n> install.packages(c('rgdal'),repos = \"http:\/\/cran.case.edu<\/a>\", configure.args=c(\"--with-proj-include=\/packages\/PROJ\/6.1.0\/include\",\"--with-proj-lib=\/packages\/PROJ\/6.1.0\/lib\"))<\/code><\/li>\n<\/ol>\n<\/li>\n<\/ol>\n

      Troubleshooting<\/h2>\n

      If you receive the proj_create_crs_to_crs_from_pj<\/span> error, then you will need to force the installer to use an older version. This can be done inside an R shell by executing the following commands:
      \n> packageurl <- \"https:\/\/cran.r-project.org\/src\/contrib\/Archive\/rgdal\/rgdal_1.4-8.tar.gz\"
      \n> install.packages(packageurl, repos=NULL, type=\"source\")
      \n<\/code><\/p>\n

      If you have any questions, please contact us<\/a>.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"

      Installing Rgdal What follows are instructions to install rgdal for use within R 3.6.3, and gdal 3.0.4. The following commands will need to be run on one of our login nodes wind or rain. In order to install rgdal: Load the R, proj, and gdal modules required for rgdal. [abc123@wind ~]$ module load R\/3.6.3 proj\/6.1.0 […]<\/p>\n","protected":false},"author":469,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_relevanssi_hide_post":"","_relevanssi_hide_content":"","_relevanssi_pin_for_all":"","_relevanssi_pin_keywords":"","_relevanssi_unpin_keywords":"","_relevanssi_related_keywords":"","_relevanssi_related_include_ids":"","_relevanssi_related_exclude_ids":"","_relevanssi_related_no_append":"","_relevanssi_related_not_related":"","_relevanssi_related_posts":"","_relevanssi_noindex_reason":"","ring_central_script_selection":"","footnotes":""},"class_list":["post-1749","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/pages\/1749","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/users\/469"}],"replies":[{"embeddable":true,"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/comments?post=1749"}],"version-history":[{"count":24,"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/pages\/1749\/revisions"}],"predecessor-version":[{"id":3581,"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/pages\/1749\/revisions\/3581"}],"wp:attachment":[{"href":"https:\/\/in.nau.edu\/arc\/wp-json\/wp\/v2\/media?parent=1749"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}